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* Tweak module files * Update Makefile * Cleanup * Run make * Update workflow * Created prelim yaml file for PortalPublication (#542) * Created prelim yaml file for PortalPublication * Rebuild NF.jsonld, json * Add compilation step * Created a parent publication model and an nf specific model. Anh nyuget edits were also incorporated * Rebuild NF.jsonld, json * Updated PortalPublication with new Enum for StudyUse * Rebuild NF.jsonld, json * fixed string vs int for pmid * Fixed string vs int for pmid * Rebuild NF.jsonld, json * Update make step * Rebuild NF.jsonld, json * Made requested changes to PortalPublication model, along with fixed typos * Rebuild NF.jsonld, json * Update Makefile, make final revisions, recompile * Rebuild NF.jsonld, json --------- Co-authored-by: nf-osi[bot] <nf-osi@sagebionetworks.org> Co-authored-by: Anh Nguyet Vu <32753274+anngvu@users.noreply.github.com> Co-authored-by: Anh Nguyet Vu <anngvu@gmail.com> * Finalize changes * Add script * Rebuild NF.jsonld, json * Update workflow * Tweak display labels * Fixes * Rebuild NF.jsonld, json * Fix missing license values * Update ref in docs --------- Co-authored-by: aditya-nath-sage <aditya.nath@sagebase.org> Co-authored-by: nf-osi[bot] <nf-osi@sagebionetworks.org>
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,34 @@ | ||
| #!/bin/bash | ||
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|
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| for FILE in $1 | ||
| do | ||
| # Synapse does not allow additionalProperties in schema, so remove that first | ||
| jq 'del(.additionalProperties)' $FILE > temp.json | ||
| REQUEST_BODY=$(jq '{schema : ., concreteType: "org.sagebionetworks.repo.model.schema.CreateSchemaRequest", dryRun: false }' temp.json) | ||
| RESPONSE=$(curl -X POST https://repo-prod.prod.sagebase.org/repo/v1/schema/type/create/async/start \ | ||
| -H "Authorization: Bearer $SYNAPSE_AUTH_TOKEN" \ | ||
| -H "Content-Type: application/json" \ | ||
| -d "$REQUEST_BODY") | ||
| rm temp.json | ||
|
|
||
| # Will error if token not within response | ||
| echo $RESPONSE | ||
| TOKEN=$( echo $RESPONSE | jq -e -r '.token') | ||
| sleep 1 | ||
| STATUS=$(curl "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/create/async/get/$TOKEN" \ | ||
| -H "Authorization: Bearer $SYNAPSE_AUTH_TOKEN") | ||
| while true; do | ||
| if echo "$STATUS" | jq -e '.jobState == "PROCESSING"' > /dev/null; then | ||
| sleep 1 | ||
| STATUS=$(curl "https://repo-prod.prod.sagebase.org/repo/v1/schema/type/create/async/get/$TOKEN" \ | ||
| -H "Authorization: Bearer $SYNAPSE_AUTH_TOKEN") | ||
| elif echo "$STATUS" | jq -e '.concreteType == "org.sagebionetworks.repo.model.ErrorResponse"' > /dev/null; then | ||
| echo "Error: $(echo $STATUS | jq -r '.reason')" | ||
| exit 1 | ||
| else | ||
| echo "Success:" | ||
| echo "$STATUS" | jq -e '.newVersionInfo' | ||
| break | ||
| fi | ||
| done | ||
| done |
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