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added primerset artic to usage examples
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svarona committed Jan 16, 2024
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Expand Up @@ -104,6 +104,7 @@ nextflow run nf-core/viralrecon \
--outdir <OUTDIR> \
--platform nanopore \
--genome 'MN908947.3' \
--primer_set 'artic' \
--primer_set_version 3 \
--fastq_dir fastq_pass/ \
--fast5_dir fast5_pass/ \
Expand All @@ -123,6 +124,7 @@ nextflow run nf-core/viralrecon \
--outdir <OUTDIR> \
--platform nanopore \
--genome 'MN908947.3' \
--primer_set 'artic' \
--primer_set_version 3 \
--fastq_dir fastq_pass/ \
--artic_minion_caller medaka \
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