convert console snippets to bash snippets in the template

[mashehu]

console snippets are in general only nice to display terminal outputs, not anything related to scripts or commands.

PR checklist

• This comment contains a description of changes (with reason)

[codecov]

Codecov Report

Merging #1729 (447b2d5) into dev (a9d0665) will decrease coverage by 0.11%.
The diff coverage is n/a.

@@            Coverage Diff             @@
##              dev    #1729      +/-   ##
==========================================
- Coverage   68.29%   68.17%   -0.12%     
==========================================
  Files          59       59              
  Lines        7063     7071       +8     
==========================================
- Hits         4824     4821       -3     
- Misses       2239     2250      +11     

Impacted Files	Coverage Δ
nf_core/modules/modules_command.py	84.00% <0.00%> (-3.81%)	⬇️
nf_core/modules/module_test.py	53.33% <0.00%> (-1.47%)	⬇️
nf_core/modules/test_yml_builder.py	47.24% <0.00%> (-1.38%)	⬇️
nf_core/modules/list.py	71.23% <0.00%> (-0.39%)	⬇️
nf_core/modules/install.py	72.36% <0.00%> (-0.36%)	⬇️
nf_core/utils.py	80.89% <0.00%> (-0.20%)	⬇️
nf_core/modules/update.py	78.36% <0.00%> (-0.09%)	⬇️
nf_core/modules/patch.py	81.48% <0.00%> (ø)
nf_core/modules/lint/__init__.py	82.98% <0.00%> (+0.01%)	⬆️
nf_core/modules/info.py	17.16% <0.00%> (+0.24%)	⬆️
... and 3 more

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[ErikDanielsson]

Looks good, but you should update the changelog (:

[mashehu]

Done! 🙂

[ErikDanielsson]

Perfect!