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Merge pull request #1467 from MatthiasZepper/issue1294_colors
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Issue1294: Fixes to colors in Sphinx theme
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@ewels
ewels authored Mar 17, 2022
2 parents 5a7f5e6 + cdd1f9d commit a4944ff
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1 change: 1 addition & 0 deletions CHANGELOG.md
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* Handle exception in `nf-core list` when a broken git repo is found ([#1273](https://github.com/nf-core/tools/issues/1273))
* Updated URL for pipeline lint test docs ([#1348](https://github.com/nf-core/tools/issues/1348))
* Updated `nf-core create` to tolerate failures and retry when fetching pipeline logos from the website ([#1369](https://github.com/nf-core/tools/issues/1369))
* Modified the CSS overriding `sphinx_rtd_theme` default colors to fix some glitches in the API documentation ([#1294](https://github.com/nf-core/tools/issues/1294))

### Modules

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45 changes: 29 additions & 16 deletions docs/api/_src/_static/css/custom.css
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@@ -1,4 +1,10 @@
@media (prefers-color-scheme: light) {
a, a:visited {
color: #246EB9;
}
a:hover, a:focus, a:active {
color: #C03221;
}
.wy-nav-side{
background-color: #ededed;
}
Expand All @@ -21,7 +27,7 @@

code, .rst-content code.literal{
background-color: rgba(220,220,220,0.4);
color: #db9444;
color: #C03221;
border: none;
}
.rst-content .note .admonition-title{
Expand All @@ -35,9 +41,6 @@
.rst-content .method>dt>code {
color: #f5f6f7;
}
.sig-paren{
color: #db9444;
}
.rst-content div[class^=highlight], .rst-content pre.literal-block{
border:none;
}
Expand All @@ -50,19 +53,26 @@
background-color: #585b60fc;
}
.highlight .k, .highlight .nt, .highlight .no{
color: #6fb2e8;
color: #246EB9;
}
.highlight .s, .highlight .s1, .highlight .s2{
.highlight .s, .highlight .s1, .highlight .s2, .highlight .na{
color: #32AD65;
}
.highlight .nb, .highlight .o{
color: #db9444;
.highlight .nb, .highlight .o, .highlight .cm{
color: #FFBE0B;
}
.highlight .c1{
color: #88898afc;
}
.highlight .nv{
color: #f9d977;
.highlight .nv, .py>span{
color: #C03221;
}
.py .sig-param, .py .sig-paren, .property .pre{
color: #EEF0F2;
}

.method > .py .sig-param, .method > .py .sig-paren{
color: #32AD65;
}
.btn.btn-neutral {
background-color: #e5e6e7d4 !important;
Expand All @@ -80,8 +90,8 @@
}


.rst-content .admonition-todo .admonition-title, .rst-content .admonition-todo .wy-alert-title, .rst-content .attention .admonition-title, .rst-content .attention .wy-alert-title, .rst-content .caution .admonition-title, .rst-content .caution .wy-alert-title, .rst-content .warning .admonition-title, .rst-content .warning .wy-alert-title, .rst-content .wy-alert-warning.admonition .admonition-title, .rst-content .wy-alert-warning.admonition .wy-alert-title, .rst-content .wy-alert-warning.danger .admonition-title, .rst-content .wy-alert-warning.danger .wy-alert-title, .rst-content .wy-alert-warning.error .admonition-title, .rst-content .wy-alert-warning.error .wy-alert-title, .rst-content .wy-alert-warning.hint .admonition-title, .rst-content .wy-alert-warning.hint .wy-alert-title, .rst-content .wy-alert-warning.important .admonition-title, .rst-content .wy-alert-warning.important .wy-alert-title, .rst-content .wy-alert-warning.note .admonition-title, .rst-content .wy-alert-warning.note .wy-alert-title, .rst-content .wy-alert-warning.seealso .admonition-title, .rst-content .wy-alert-warning.seealso .wy-alert-title, .rst-content .wy-alert-warning.tip .admonition-title, .rst-content .wy-alert-warning.tip .wy-alert-title, .rst-content .wy-alert.wy-alert-warning .admonition-title, .wy-alert.wy-alert-warning .rst-content .admonition-title, .wy-alert.wy-alert-warning .wy-alert-title {
background-color: #f4a25b;
.rst-content .admonition-todo .admonition-title, .rst-content .admonition-todo .wy-alert-title, .rst-content .attention .admonition-title, .rst-content .attention .wy-alert-title, .rst-content .caution .admonition-title, .rst-content .caution .wy-alert-title, .rst-content .warning .admonition-title, .rst-content .warning .wy-alert-title, .rst-content .wy-alert-warning.admonition .admonition-title, .rst-content .wy-alert-warning.admonition .wy-alert-title, .rst-content .wy-alert-warning.danger .admonition-title, .rst-content .wy-alert-warning.danger .wy-alert-title, .rst-content .wy-alert-warning.error .admonition-title, .rst-content .wy-alert-warning.error .wy-alert-title, .rst-content .wy-alert-warning.hint .admonition-title, .rst-content .wy-alert-warning.hint .wy-alert-title, .rst-content .seealso .admonition-title, .rst-content .seealso .wy-alert-title, .rst-content .wy-alert-warning.important .admonition-title, .rst-content .wy-alert-warning.important .wy-alert-title, .rst-content .wy-alert-warning.note .admonition-title, .rst-content .wy-alert-warning.note .wy-alert-title, .rst-content .wy-alert-warning.seealso .admonition-title, .rst-content .wy-alert-warning.seealso .wy-alert-title, .rst-content .wy-alert-warning.tip .admonition-title, .rst-content .wy-alert-warning.tip .wy-alert-title, .rst-content .wy-alert.wy-alert-warning .admonition-title, .wy-alert.wy-alert-warning .rst-content .admonition-title, .wy-alert.wy-alert-warning .wy-alert-title {
background-color: #246EB9;
}
.rst-content .admonition-todo, .rst-content .attention, .rst-content .caution, .rst-content .warning, .rst-content .wy-alert-warning.admonition, .rst-content .wy-alert-warning.danger, .rst-content .wy-alert-warning.error, .rst-content .wy-alert-warning.hint, .rst-content .wy-alert-warning.important, .rst-content .wy-alert-warning.note, .rst-content .wy-alert-warning.seealso, .rst-content .wy-alert-warning.tip, .wy-alert.wy-alert-warning {
color: #343434;
Expand All @@ -107,9 +117,12 @@
background-color: #343434;
color: #e5e6e7;
}
a, a:hover, a:focus, a:active {
a, a:visited {
color: #6fb2e8;
}
a:hover, a:focus, a:active {
color: #db9444;
}
code, .rst-content code.literal{
background-color: rgba(220,220,220,0.1);
color: #db9444;
Expand Down Expand Up @@ -161,10 +174,10 @@
.highlight .k, .highlight .nt, .highlight .no{
color: #6fb2e8;
}
.highlight .s, .highlight .s1, .highlight .s2{
.highlight .s, .highlight .s1, .highlight .s2, .highlight .na{
color: #32AD65;
}
.highlight .nb, .highlight .o{
.highlight .nb, .highlight .o, .highlight .cm{
color: #db9444;
}
.highlight .c1{
Expand All @@ -189,7 +202,7 @@
border: none;
}

.rst-content .admonition-todo .admonition-title, .rst-content .admonition-todo .wy-alert-title, .rst-content .attention .admonition-title, .rst-content .attention .wy-alert-title, .rst-content .caution .admonition-title, .rst-content .caution .wy-alert-title, .rst-content .warning .admonition-title, .rst-content .warning .wy-alert-title, .rst-content .wy-alert-warning.admonition .admonition-title, .rst-content .wy-alert-warning.admonition .wy-alert-title, .rst-content .wy-alert-warning.danger .admonition-title, .rst-content .wy-alert-warning.danger .wy-alert-title, .rst-content .wy-alert-warning.error .admonition-title, .rst-content .wy-alert-warning.error .wy-alert-title, .rst-content .wy-alert-warning.hint .admonition-title, .rst-content .wy-alert-warning.hint .wy-alert-title, .rst-content .wy-alert-warning.important .admonition-title, .rst-content .wy-alert-warning.important .wy-alert-title, .rst-content .wy-alert-warning.note .admonition-title, .rst-content .wy-alert-warning.note .wy-alert-title, .rst-content .wy-alert-warning.seealso .admonition-title, .rst-content .wy-alert-warning.seealso .wy-alert-title, .rst-content .wy-alert-warning.tip .admonition-title, .rst-content .wy-alert-warning.tip .wy-alert-title, .rst-content .wy-alert.wy-alert-warning .admonition-title, .wy-alert.wy-alert-warning .rst-content .admonition-title, .wy-alert.wy-alert-warning .wy-alert-title {
.rst-content .admonition-todo .admonition-title, .rst-content .admonition-todo .wy-alert-title, .rst-content .attention .admonition-title, .rst-content .attention .wy-alert-title, .rst-content .caution .admonition-title, .rst-content .caution .wy-alert-title, .rst-content .warning .admonition-title, .rst-content .warning .wy-alert-title, .rst-content .wy-alert-warning.admonition .admonition-title, .rst-content .wy-alert-warning.admonition .wy-alert-title, .rst-content .wy-alert-warning.danger .admonition-title, .rst-content .wy-alert-warning.danger .wy-alert-title, .rst-content .wy-alert-warning.error .admonition-title, .rst-content .wy-alert-warning.error .wy-alert-title, .rst-content .wy-alert-warning.hint .admonition-title, .rst-content .wy-alert-warning.hint .wy-alert-title, .rst-content .seealso .admonition-title, .rst-content .seealso .wy-alert-title, .rst-content .wy-alert-warning.important .admonition-title, .rst-content .wy-alert-warning.important .wy-alert-title, .rst-content .wy-alert-warning.note .admonition-title, .rst-content .wy-alert-warning.note .wy-alert-title, .rst-content .wy-alert-warning.seealso .admonition-title, .rst-content .wy-alert-warning.seealso .wy-alert-title, .rst-content .wy-alert-warning.tip .admonition-title, .rst-content .wy-alert-warning.tip .wy-alert-title, .rst-content .wy-alert.wy-alert-warning .admonition-title, .wy-alert.wy-alert-warning .rst-content .admonition-title, .wy-alert.wy-alert-warning .wy-alert-title {
background-color: #f4a25b;
}
.rst-content .admonition-todo, .rst-content .attention, .rst-content .caution, .rst-content .warning, .rst-content .wy-alert-warning.admonition, .rst-content .wy-alert-warning.danger, .rst-content .wy-alert-warning.error, .rst-content .wy-alert-warning.hint, .rst-content .wy-alert-warning.important, .rst-content .wy-alert-warning.note, .rst-content .wy-alert-warning.seealso, .rst-content .wy-alert-warning.tip, .wy-alert.wy-alert-warning {
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