Merge pull request #2069 from awgymer/fix-module-template-org

Replace nf-core with org in module templates
nf-core · Nov 29, 2022 · 87a3a5b · 87a3a5b
2 parents a6af6ce + a545a5a
commit 87a3a5b
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Showing 4 changed files with 4 additions and 4 deletions.
diff --git a/nf_core/module-template/tests/main.nf b/nf_core/module-template/tests/main.nf
@@ -2,7 +2,7 @@
 
 nextflow.enable.dsl = 2
 
-include { {{ tool_name_underscore|upper }} } from '../../../../{{ "../" if subtool else "" }}modules/nf-core/{{ tool_dir }}/main.nf'
+include { {{ tool_name_underscore|upper }} } from '../../../../{{ "../" if subtool else "" }}modules/{{ org }}/{{ tool_dir }}/main.nf'
 
 workflow test_{{ tool_name_underscore }} {
     {% if has_meta %}

diff --git a/nf_core/module-template/tests/test.yml b/nf_core/module-template/tests/test.yml
@@ -1,7 +1,7 @@
 ## TODO nf-core: Please run the following command to build this file:
 #                nf-core modules create-test-yml {{ tool }}{%- if subtool %}/{{ subtool }}{%- endif %}
 - name: "{{ tool }}{{ ' '+subtool if subtool else '' }}"
-  command: nextflow run ./tests/modules/nf-core/{{ tool_dir }} -entry test_{{ tool_name_underscore }} -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/{{ tool_dir }}/nextflow.config
+  command: nextflow run ./tests/modules/{{ org }}/{{ tool_dir }} -entry test_{{ tool_name_underscore }} -c ./tests/config/nextflow.config -c ./tests/modules/{{ org }}/{{ tool_dir }}/nextflow.config
   tags:
     - "{{ tool }}{% if subtool -%}"
     - "{{ tool }}/{{ subtool }}{%- endif %}"

diff --git a/nf_core/subworkflow-template/tests/main.nf b/nf_core/subworkflow-template/tests/main.nf
@@ -2,7 +2,7 @@
 
 nextflow.enable.dsl = 2
 
-include { {{ subworkflow_name|upper }} } from '../../../../subworkflows/nf-core/{{ subworkflow_dir }}/main.nf'
+include { {{ subworkflow_name|upper }} } from '../../../../subworkflows/{{ org }}/{{ subworkflow_dir }}/main.nf'
 
 workflow test_{{ subworkflow_name }} {
     {% if has_meta %}

diff --git a/nf_core/subworkflow-template/tests/test.yml b/nf_core/subworkflow-template/tests/test.yml
@@ -1,7 +1,7 @@
 ## TODO nf-core: Please run the following command to build this file:
 #                nf-core subworkflows create-test-yml {{ subworkflow_name_underscore }}
 - name: "{{ subworkflow_name }}"
-  command: nextflow run ./tests/subworkflows/nf-core/{{ subworkflow_dir }} -entry test_{{ subworkflow_name }} -c ./tests/config/nextflow.config
+  command: nextflow run ./tests/subworkflows/{{ org }}/{{ subworkflow_dir }} -entry test_{{ subworkflow_name }} -c ./tests/config/nextflow.config
   tags:
     - "subworkflows"
     - "subworkflows/{{ subworkflow_name }}"