Merge pull request #2568 from mirpedrol/nftest-template

migrating from pytest to nf-test will copy the template files

CHANGELOG.md

@@ -28,6 +28,7 @@
 - Replace ModulePatch by ComponentPatch ([#2482](https://github.com/nf-core/tools/pull/2482))
 - Fixed `nf-core modules lint` to work with new module structure for nf-test ([#2494](https://github.com/nf-core/tools/pull/2494))
 - Add option `--migrate-pytest` to create a module with nf-test taking into account an existing module ([#2549](https://github.com/nf-core/tools/pull/2549))
+- Modules `--migrate-pytest` copies template scripts ([#2568](https://github.com/nf-core/tools/pull/2568))
 
 ### Subworkflows
 

nf_core/components/create.py

@@ -431,6 +431,11 @@ def _copy_old_files(self, component_old_path):
         if self.component_type == "modules":
             log.debug("Copying original environment.yml file")
             shutil.copyfile(component_old_path / "environment.yml", self.file_paths["environment.yml"])
+            if (component_old_path / "templates").is_dir():
+                log.debug("Copying original templates directory")
+                shutil.copytree(
+                    component_old_path / "templates", self.file_paths["environment.yml"].parent / "templates"
+                )
         # Create a nextflow.config file if it contains information other than publishDir
         pytest_dir = Path(self.directory, "tests", self.component_type, self.org, self.component_dir)
         nextflow_config = pytest_dir / "nextflow.config"