Merge pull request #2450 from mashehu/add-retry-functionality

use caching from setup-python
nf-core · Sep 28, 2023 · 15129f9 · 15129f9
2 parents 42ba2e6 + c47932a
commit 15129f9
Showing 1 changed file with 7 additions and 24 deletions.
diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml
@@ -21,7 +21,7 @@ concurrency:
   cancel-in-progress: true
 
 env:
-  GITHUB_TOKEN: ${{ github.token }}
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
 
 jobs:
   pytest:
@@ -42,18 +42,8 @@ jobs:
         uses: actions/setup-python@v4
         with:
           python-version: ${{ matrix.python-version }}
-
-      - name: Cache python dependencies
-        uses: actions/cache@v3
-        id: pip_cache
-        with:
-          path: ~/.cache/pip
-          key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }}
-          restore-keys: |
-            ${{ runner.os }}-pip-
-
-      - if: ${{ steps.pip_cache.outputs.cache-hit != 'true' }}
-        name: Install python dependencies
+          cache: "pip"
+      - name: Install dependencies
         run: |
           python -m pip install --upgrade pip -r requirements-dev.txt
           pip install -e .
@@ -65,18 +55,11 @@ jobs:
           sudo apt remove git git-man
           sudo add-apt-repository --remove ppa:git-core/ppa
           sudo apt install git
+      - name: Get current date
+        id: date
+        run: echo "date=$(date +'%Y-%m')" >> $GITHUB_ENV
 
-      - name: Cache Nextflow
-        uses: actions/cache@v3
-        id: nfcore_cache
-        with:
-          path: ~/.nextflow
-          key: ${{ runner.os }}-nextflow-${{ hashFiles('nextflow.config') }}
-          restore-keys: |
-            ${{ runner.os }}-nextflow-
-
-      - if: ${{ steps.nfcore_cache.outputs.cache-hit != 'true' }}
-        name: Install Nextflow
+      - name: Install Nextflow
         uses: nf-core/setup-nextflow@v1
         with:
           version: "latest-everything"