update test files

nf-core · Aug 10, 2018 · 07aa740 · 07aa740
1 parent ecb93b6
commit 07aa740
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diff --git a/tests/lint_examples/minimal_working_example/Dockerfile b/tests/lint_examples/minimal_working_example/Dockerfile
@@ -4,4 +4,5 @@ LABEL authors="phil.ewels@scilifelab.se" \
     description="Docker image containing all requirements for the nf-core tools pipeline"
 
 COPY environment.yml /
-RUN conda env update -n root -f /environment.yml && conda clean -a
+RUN conda env create -f /environment.yml && conda clean -a
+ENV PATH /opt/conda/envs/nfcore-tools-0.4/bin:$PATH
diff --git a/tests/lint_examples/minimal_working_example/Singularity b/tests/lint_examples/minimal_working_example/Singularity
@@ -6,9 +6,13 @@ Bootstrap:docker
     DESCRIPTION Container image containing all requirements for the nf-core/tools pipeline
     VERSION 0.4
 
+%environment
+    PATH=/opt/conda/envs/nfcore-tools-0.4/bin:$PATH
+    export PATH
+
 %files
     environment.yml /
 
 %post
-    /opt/conda/bin/conda env update -n root -f /environment.yml
+    /opt/conda/bin/conda env create -n root -f /environment.yml
     /opt/conda/bin/conda clean -a