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Git reset before trying to sync
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ewels committed Mar 17, 2022
1 parent 3691805 commit 0670849
Showing 1 changed file with 5 additions and 1 deletion.
6 changes: 5 additions & 1 deletion .github/workflows/create-lint-wf.yml
Original file line number Diff line number Diff line change
Expand Up @@ -80,8 +80,12 @@ jobs:
# - name: nf-core licences
# run: nf-core --log-file log.txt licences nf-core-testpipeline

# Remove any unstaged changes from update etc and try to sync pipeline
- name: nf-core sync
run: nf-core --log-file log.txt sync --dir nf-core-testpipeline/
run: |
rm -r modules
git checkout .
nf-core --log-file log.txt sync --dir nf-core-testpipeline/
- name: nf-core schema
run: nf-core --log-file log.txt schema build --dir nf-core-testpipeline/ --no-prompts
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