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Update samplesheet to version 1.2 #236

Merged
merged 2 commits into from
Jan 8, 2025
Merged

Update samplesheet to version 1.2 #236

merged 2 commits into from
Jan 8, 2025

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JoseEspinosa
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@JoseEspinosa JoseEspinosa commented Jan 7, 2025 •
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Update samplesheet to version 1.2. nf-core/test-datasets have been update here.

Closes #235

PR checklist

  • This comment contains a description of changes (with reason).
  • If necessary, also make a PR on the nf-core/proteinfold branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • CHANGELOG.md is updated.

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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.0.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

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github-actions bot commented Jan 7, 2025 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 3eb560f

+| ✅ 205 tests passed       |+
#| ❔   4 tests were ignored |#
!| ❗   9 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • files_exist - File not found: conf/igenomes_ignored.config
  • pipeline_todos - TODO string in usage.md: Add documentation about anything specific to running your pipeline. For general topics, please point to (and add to) the main nf-core website.
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in base.config: Customise requirements for specific processes.
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 3.0.2
  • Run at 2025-01-07 17:43:43

@JoseEspinosa JoseEspinosa changed the title Fixes Update samplesheet to version 1.2 Jan 8, 2025
@JoseEspinosa JoseEspinosa merged commit 1f8f208 into nf-core:dev Jan 8, 2025
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@luisas luisas luisas approved these changes

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@JoseEspinosa @nf-core-bot @luisas