Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Produce an interactive html report for the predecited strucures #182

Merged
merged 29 commits into from
Oct 4, 2024
Merged

Produce an interactive html report for the predecited strucures #182

Changes from 1 commit
Commits
Show all changes
29 commits
Select commit Hold shift + click to select a range
3d02fc5
add results visulisation
Oct 1, 2024
586798c
configure the reports
Oct 1, 2024
6985dcd
rename esmfold output pdb
Oct 1, 2024
81e877e
average, tooltip & msa png
minh-biocommons Oct 2, 2024
411816b
Merge pull request #1 from minh-biocommons/visualisation
ziadbkh Oct 2, 2024
7eeee46
rename version file name
Oct 2, 2024
f6193b8
caluclate plddt using the averages
Oct 2, 2024
84718af
update visualisation report
Oct 2, 2024
e10c344
lint files
Oct 2, 2024
c8d497a
lint files
Oct 2, 2024
e0e4531
lint files
Oct 2, 2024
72479d8
lint report
Oct 2, 2024
b32a647
lint report
Oct 2, 2024
bcce234
Update assets/proteinfold_template.html
JoseEspinosa Oct 2, 2024
82453b5
Make lint happy
JoseEspinosa Oct 2, 2024
553358b
Make lint happy again
JoseEspinosa Oct 2, 2024
fe05db4
close string
Oct 2, 2024
e19be23
Merge branch 'visualisation' of https://github.com/ziadbkh/proteinfol…
Oct 2, 2024
a4218e2
quick test
Oct 3, 2024
f949522
fix msa and pdb mix
Oct 3, 2024
f0aaa57
rename generate_report.py
ziadbkh Oct 3, 2024
3cf523f
Update modules/local/run_alphafold2.nf
ziadbkh Oct 3, 2024
75b048f
Update bin/extract_output.py
ziadbkh Oct 3, 2024
6e0a3a7
Update main.nf
ziadbkh Oct 3, 2024
114aed8
Update modules/local/colabfold_batch.nf
ziadbkh Oct 3, 2024
882015c
Update modules/local/run_esmfold.nf
ziadbkh Oct 3, 2024
de8783f
Update tower.yml
ziadbkh Oct 3, 2024
4e2ce1e
fixing reports
Oct 3, 2024
62669fe
minor fix
Oct 3, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Next Next commit
Update modules/local/colabfold_batch.nf 
Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
  • Loading branch information
@ziadbkh @JoseEspinosa
ziadbkh and JoseEspinosa authored Oct 3, 2024
commit 114aed8f313c8bc7ee916d8f81a9c439a0ba21ff
8 changes: 4 additions & 4 deletions modules/local/colabfold_batch.nf
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -18,10 +18,10 @@ process COLABFOLD_BATCH {
val numRec

output:
tuple val(meta), path ("*_relaxed_rank_*.pdb") , emit: pdb
tuple val(meta), path ("*_coverage.png") , emit: msa
tuple val(meta), path ("*_mqc.png") , emit: multiqc
path "versions.yml" , emit: versions
tuple val(meta), path ("*_relaxed_rank_*.pdb"), emit: pdb
tuple val(meta), path ("*_coverage.png") , emit: msa
tuple val(meta), path ("*_mqc.png") , emit: multiqc
path "versions.yml" , emit: versions

when:
task.ext.when == null || task.ext.when
Expand Down
Loading