Merge pull request #72 from nf-core/dev

Release 1.0.2
nf-core · Nov 20, 2023 · 436f974 · 436f974
2 parents cf8bc13 + 7bcd5d5
commit 436f974
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,7 +3,13 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [1.0.1] - 2023-10-26
+## [1.0.2] - 2023-11-20
+
+### Enhancements & fixes
+
+- [[PR #70](https://github.com/nf-core/pixelator/pull/70)] - Fix loading of absolute paths and urls in input samplesheet
+
+## [1.0.1] - 2023-10-27
 
 ### Enhancements & fixes
 

diff --git a/nextflow.config b/nextflow.config
@@ -267,7 +267,7 @@ manifest {
     description     = """Pipeline for analysis of Molecular Pixelation assays"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version = '1.0.1'
+    version         = '1.0.2'
     // TODO: Use zenodo DOI once available
     doi             = '10.1101/2023.06.05.543770'
 }

diff --git a/samplesheet.csv b/samplesheet.csv
diff --git a/subworkflows/local/input_check.nf b/subworkflows/local/input_check.nf
@@ -79,12 +79,12 @@ def resolve_relative_path(relative_path, URI samplesheet_path) {
 
     // If a scheme is given we keep it as given
     if (uri.getScheme() != null) {
-        return uri
+        return relative_path
     }
 
-    def path = new File(relative_path);
+    def path = new File(relative_path)
     if (path.isAbsolute()) {
-        return path
+        return relative_path
     }
 
     // Resolve relative paths agains the samplesheet_path