upd

docs/usage.md

@@ -226,18 +226,6 @@ To further assist in reproducibility, you can use share and reuse [parameter fil
 
 > [!NOTE]
 > These options are part of Nextflow and use a _single_ hyphen (pipeline parameters use a double-hyphen)
-> =======
-> :::tip
-> If you wish to share such profile (such as upload as supplementary material for academic publications), make sure to NOT include cluster specific paths to files, >nor institutional specific profiles.
-> :::
-
-## Core Nextflow arguments
-
-:::tip
-These options are part of Nextflow and use a _single_ hyphen (pipeline parameters use a double-hyphen).
-:::
-
-> > > > > > > origin/dev
 
 ### `-profile`
 

nextflow.config

@@ -261,23 +261,45 @@ dag {
 
 manifest {
     name            = 'nf-core/multiplesequencealign'
-    author          = """Luisa Santus, Jose Espinosa Carrasco""" // The author field is deprecated from Nextflow version 24.10.0, use contributors instead
     contributors    = [
-        // TODO nf-core: Update the field with the details of the contributors to your pipeline. New with Nextflow version 24.10.0
         [
             name: 'Luisa Santus',
-            affiliation: '',
-            email: '',
-            github: '',
-            contribution: [], // List of contribution types ('author', 'maintainer' or 'contributor')
-            orcid: ''
+            affiliation: 'Centre for Genomic Regulation (CRG)',
+            email: 'luisa.santus95@gmail.com',
+            github: '@luisas',
+            contribution: ['author', 'maintainer', 'contributor'],
+            orcid: 'https://orcid.org/0000-0002-5992-0771'
         ],
         [
             name: ' Jose Espinosa Carrasco',
-            affiliation: '',
-            email: '',
-            github: '',
-            contribution: [], // List of contribution types ('author', 'maintainer' or 'contributor')
+            affiliation: 'Centre for Genomic Regulation (CRG)',
+            email: 'joseantonio.espinosa@crg.eu',
+            github: '@joseespinosa',
+            contribution: ['author', 'maintainer', 'contributor'],
+            orcid: 'https://orcid.org/0000-0002-1541-042X'
+        ],
+        [
+            name: ' Leon Rauschning',
+            affiliation: 'Ludwig Maximilian Universitaet (LMU)',
+            email: 'leon.rauschning@tum.de',
+            github: '@lrauschning',
+            contribution: ['author', 'contributor'],
+            orcid: ''
+        ],
+        [
+            name: ' Alessio Vignoli',
+            affiliation: 'Centre for Genomic Regulation (CRG)',
+            email: 'alessio.vignoli@crg.eu',
+            github: '@alessiovignoli',
+            contribution: ['author', 'contributor'],
+            orcid: 'https://orcid.org/0000-0001-7131-2915'
+        ],
+        [
+            name: ' Igor Trujnara',
+            affiliation: 'Centre for Genomic Regulation (CRG)',
+            email: 'igor.trujnara@crg.eu',
+            github: '@itrujnara',
+            contribution: ['author', 'contributor'],
             orcid: ''
         ],
     ]