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Update to LAST version 1608 using sequera containers. #7341

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merged 1 commit into from
Jan 22, 2025

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charles-plessy
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@charles-plessy charles-plessy commented Jan 22, 2025

This version will be needed for the use of the new maf-linked tool later.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

This version will be needed for the use of the new maf-linked tool
later.
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@mashehu mashehu left a comment

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Once the rerun succeeds it's ready to be merged

@charles-plessy charles-plessy added this pull request to the merge queue Jan 22, 2025
Merged via the queue into nf-core:master with commit b651d72 Jan 22, 2025
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@charles-plessy charles-plessy deleted the last_update_to_1608 branch January 22, 2025 07:26
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2 participants