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Merge branch 'master' into hmmer/hmmalign
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vagkaratzas authored Nov 13, 2024
2 parents 0b4d6f9 + bc6d86f commit 9714bab
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Showing 2 changed files with 7 additions and 1 deletion.
7 changes: 6 additions & 1 deletion .github/workflows/wave.yml
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,8 @@ jobs:
generate-matrix:
name: generate-matrix
runs-on: ubuntu-latest
if: github.repository == 'nf-core/modules'
# Only run on Pull Requests within the same repository, and not from forks
if: github.event.pull_request.head.repo.full_name == github.repository

steps:
- uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
Expand Down Expand Up @@ -67,6 +68,8 @@ jobs:
return '${{ matrix.files }}'.replace('modules/nf-core/', '').replace('/environment.yml', '').replace('/', '_');
- name: Build container
# FIXME Hack while iron out the CI
continue-on-error: true
if: matrix.profile == 'docker'
run: |
wave --conda-file "${{ matrix.files }}" \
Expand All @@ -76,6 +79,8 @@ jobs:
--tower-workspace-id ${{ secrets.TOWER_WORKSPACE_ID }}
- name: Build Singularity
# FIXME Hack while iron out the CI
continue-on-error: true
if: matrix.profile == 'singularity'
run: |
wave --conda-file "${{ matrix.files }}" \
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1 change: 1 addition & 0 deletions modules/nf-core/fgbio/sortbam/environment.yml
Original file line number Diff line number Diff line change
Expand Up @@ -2,4 +2,5 @@ channels:
- conda-forge
- bioconda
dependencies:
# renovate: datasource=conda depName=bioconda/fgbio
- bioconda::fgbio=2.4.0

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