Disallow using the Conda/Mamba profile

Disallow using the Conda or Mamba profiles for the QUARTONOTEBOOK
module, as the environment created differs from that created with
containers. The Conda version of Quarto does not work on ARM64
architectures due to Pandoc-related issues, but installing outside Conda
works in a container-context. It is thus impossible to get the same
environment in a container image and using Conda, if compatibility with
both AMD64 and ARM64 architectures is desired (which it is). Hopefully
the issues with Conda will be solved in the future.

.github/workflows/test.yml

@@ -542,6 +542,8 @@ jobs:
             tags: merquryfk/merquryfk
           - profile: conda
             tags: merquryfk/ploidyplot
+          - profile: conda
+            tags: quartonotebook
           - profile: conda
             tags: sentieon/bwaindex
           - profile: conda

modules/nf-core/quartonotebook/main.nf

@@ -8,7 +8,6 @@ process QUARTONOTEBOOK {
     // required dependencies for your analyses. You'll at least need Quarto
     // itself, Papermill and whatever language you are running your analyses on;
     // you can see an example in this module's Dockerfile.
-    conda "conda-forge::jupyter=1.0.0 conda-forge::matplotlib=3.4.3 conda-forge::papermill=2.4.0 conda-forge::quarto=1.3.433 conda-forge::r-rmarkdown=2.25"
     container "docker.io/erikfas/quartonotebook"
 
     input:
@@ -26,12 +25,9 @@ process QUARTONOTEBOOK {
     task.ext.when == null || task.ext.when
 
     script:
-    // Exit if running this module with -profile conda / -profile mamba on ARM64
+    // Exit if running this module with -profile conda / -profile mamba
     if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {
-        arch = System.getProperty("os.arch")
-        if (arch == "arm64" || arch == "aarch64") {
-            exit 1, "The QUARTONOTEBOOK module does not support Conda/Mamba on ARM64. Please use Docker / Singularity / Podman instead."
-        }
+        exit 1, "The QUARTONOTEBOOK module does not support Conda/Mamba, please use Docker / Singularity / Podman instead."
     }
     def args = task.ext.args ?: ''
     def prefix = task.ext.prefix ?: "${meta.id}"