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Update missed renovate environments (#4296)
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* chore(deps): Bump htseq conda env

* chore(deps): Update bowtie2 conda env

* ci(renovate): Assign CodeOwners to PRs

* ci(renovate): Move gitAuthor to main config

* ci(renovate): Try to add a header to stop the merge
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edmundmiller authored Nov 3, 2023
1 parent 66727db commit 69d6b0e
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Showing 6 changed files with 7 additions and 9 deletions.
5 changes: 0 additions & 5 deletions .github/renovate-bot.json5

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3 changes: 3 additions & 0 deletions .github/renovate.json5
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Expand Up @@ -14,6 +14,9 @@
rebaseWhen: "conflicted",
reviewers: ["team:modules"],
"pre-commit": {
assigneesFromCodeOwners: true,
gitAuthor: "nf-core-bot <renovate@nf-co.re>",
prHeader: "## WARNING\n - [ ] I have made sure to update the singularity and conda images",
enabled: true,
},
customManagers: [
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2 changes: 1 addition & 1 deletion modules/nf-core/bowtie2/build/environment.yml
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Expand Up @@ -3,4 +3,4 @@ channels:
- bioconda
- defaults
dependencies:
- bioconda::bowtie2=2.4.4
- bioconda::bowtie2=2.4.5
2 changes: 1 addition & 1 deletion modules/nf-core/bowtie2/build/main.nf
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Expand Up @@ -4,7 +4,7 @@ process BOWTIE2_BUILD {

conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/bowtie2:2.4.4--py39hbb4e92a_0' :
'https://depot.galaxyproject.org/singularity/bowtie2:2.4.5--py39hbb4e92a_0' :
'biocontainers/bowtie2:2.4.5--py39hbb4e92a_0' }"

input:
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2 changes: 1 addition & 1 deletion modules/nf-core/htseq/count/environment.yml
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Expand Up @@ -3,4 +3,4 @@ channels:
- bioconda
- defaults
dependencies:
- bioconda::htseq=2.0.2
- bioconda::htseq=2.0.3
2 changes: 1 addition & 1 deletion modules/nf-core/htseq/count/main.nf
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Expand Up @@ -4,7 +4,7 @@ process HTSEQ_COUNT {

conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/htseq:2.0.2--py310ha14a713_0':
'https://depot.galaxyproject.org/singularity/htseq:2.0.3--py310ha14a713_0':
'biocontainers/htseq:2.0.3--py310ha14a713_0' }"

input:
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