Bump indexing to match quant in kallisto

nf-core · Nov 2, 2023 · 48d646a · 48d646a
1 parent a310c0e
commit 48d646a
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diff --git a/modules/nf-core/kallisto/index/environment.yml b/modules/nf-core/kallisto/index/environment.yml
@@ -3,4 +3,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - bioconda::kallisto=0.46.2
+  - bioconda::kallisto=0.48.0
diff --git a/modules/nf-core/kallisto/index/main.nf b/modules/nf-core/kallisto/index/main.nf
@@ -4,8 +4,8 @@ process KALLISTO_INDEX {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/kallisto:0.46.2--h4f7b962_1' :
-        'biocontainers/kallisto:0.46.2--h4f7b962_1' }"
+        'https://depot.galaxyproject.org/singularity/kallisto:0.48.0--h15996b6_2':
+        'biocontainers/kallisto:0.48.0--h15996b6_2' }"
 
     input:
     tuple val(meta), path(fasta)