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Update nextflow.config
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danilodileo authored Jan 20, 2025
1 parent 69d0ee7 commit c81fdcb
Showing 1 changed file with 17 additions and 12 deletions.
29 changes: 17 additions & 12 deletions nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -201,8 +201,6 @@ profiles {
includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/nfcore_custom.config" : "/dev/null"

// Load nf-core/magmap custom profiles from different institutions.
// TODO nf-core: Optionally, you can add a pipeline-specific nf-core config at https://github.com/nf-core/configs
// includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/pipeline/magmap.config" : "/dev/null"

// Set default registry for Apptainer, Docker, Podman, Charliecloud and Singularity independent of -profile
// Will not be used unless Apptainer / Docker / Podman / Charliecloud / Singularity are enabled
Expand Down Expand Up @@ -258,23 +256,30 @@ manifest {
name = 'nf-core/magmap'
author = """Danilo Di Leo, Emelie Nilsson and Daniel Lundin""" // The author field is deprecated from Nextflow version 24.10.0, use contributors instead
contributors = [
// TODO nf-core: Update the field with the details of the contributors to your pipeline. New with Nextflow version 24.10.0
[
name: 'Danilo Di Leo',
affiliation: '',
email: '',
github: '',
contribution: [], // List of contribution types ('author', 'maintainer' or 'contributor')
affiliation: 'Linnaeus University, Kalmar, Sweden',
email: 'danilo.dileo@lnu.se',
github: '@danilodileo',
contribution: [ 'author', 'maintainer' ],
orcid: ''
],
[
name: ' Emelie Nilsson and Daniel Lundin',
affiliation: '',
email: '',
github: '',
contribution: [], // List of contribution types ('author', 'maintainer' or 'contributor')
orcid: ''
affiliation: 'Linnaeus University, Kalmar, Sweden',
email: 'emelie.nilsson@lnu.se',
github: '@emnilsson',
contribution: [ 'author'],
orcid: 'https://orcid.org/0000-0001-5103-214X'
],
[
name: 'Daniel Lundin',
affiliation: 'Linnaeus University, Kalmar, Sweden',
email: 'matricaria.suaveolens@gmail.com',
github: '@erikrikarddaniel',
contribution: [ 'author', 'maintainer' ],
orcid: 'https://orcid.org/0000-0002-8779-6464'
]
]
homePage = 'https://github.com/nf-core/magmap'
description = """nf-core/magmap is a bioinformatics best-practice analysis pipeline for mapping reads to a (large) collections of genomes."""
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