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Workflow output definition #1151

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Workflow output definition

Workflow output definition #1151

Triggered via pull request February 28, 2024 21:01
@bentshermanbentsherman
synchronize #275
workflow-inputs-outputs
Status Failure
Total duration 1m 8s
Artifacts 1

linting.yml

on: pull_request
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19s
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nf-core
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110 errors and 1 warning
pre-commit
Process completed with exit code 1.
Run with profile test: Run with profile test#L1
Assertion failed: assert workflow.success | | workflow false
Run with profile test: Run with profile test#L1
Assertion failed: assert workflow.success | | workflow false
Parameters: --download_method aspera: Parameters: --download_method aspera#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method aspera: Parameters: --download_method aspera#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method sratools: Parameters: --download_method sratools#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method sratools: Parameters: --download_method sratools#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline rnaseq: Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed: 2 of 3 assertions failed
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: .devcontainer#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline viralrecon: Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline atacseq: Parameters: --nf_core_pipeline atacseq#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline taxprofiler: Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed: 2 of 3 assertions failed
Parameters: default: Parameters: default#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline rnaseq: Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed: 2 of 3 assertions failed
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: .devcontainer#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline viralrecon: Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline atacseq: Parameters: --nf_core_pipeline atacseq#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline taxprofiler: Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed: 2 of 3 assertions failed
Parameters: default: Parameters: default#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline rnaseq: Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed: 2 of 3 assertions failed
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: .devcontainer#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --skip_fastq_download: Parameters: --skip_fastq_download#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method aspera: Parameters: --download_method aspera#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline viralrecon: Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline atacseq: Parameters: --nf_core_pipeline atacseq#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline taxprofiler: Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed: 2 of 3 assertions failed
Parameters: default: Parameters: default#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method sratools: Parameters: --download_method sratools#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline rnaseq: Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed: 2 of 3 assertions failed
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: .devcontainer#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --skip_fastq_download: Parameters: --skip_fastq_download#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method aspera: Parameters: --download_method aspera#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline viralrecon: Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline atacseq: Parameters: --nf_core_pipeline atacseq#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline taxprofiler: Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed: 2 of 3 assertions failed
Parameters: default: Parameters: default#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method sratools: Parameters: --download_method sratools#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline rnaseq: Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed: 2 of 3 assertions failed
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: .devcontainer#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --skip_fastq_download: Parameters: --skip_fastq_download#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method aspera: Parameters: --download_method aspera#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline viralrecon: Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline atacseq: Parameters: --nf_core_pipeline atacseq#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline taxprofiler: Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed: 2 of 3 assertions failed
Parameters: default: Parameters: default#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method sratools: Parameters: --download_method sratools#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline rnaseq: Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed: 2 of 3 assertions failed
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: .devcontainer#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --skip_fastq_download: Parameters: --skip_fastq_download#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method aspera: Parameters: --download_method aspera#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline viralrecon: Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline atacseq: Parameters: --nf_core_pipeline atacseq#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline taxprofiler: Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed: 2 of 3 assertions failed
Parameters: default: Parameters: default#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method sratools: Parameters: --download_method sratools#L1
Assertion failed: 2 of 3 assertions failed
Should run without failures: Should run without failures#L1
Assertion failed: 2 of 2 assertions failed
Parameters: --nf_core_pipeline rnaseq: Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed: 2 of 3 assertions failed
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: .devcontainer#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --skip_fastq_download: Parameters: --skip_fastq_download#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method aspera: Parameters: --download_method aspera#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline viralrecon: Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline atacseq: Parameters: --nf_core_pipeline atacseq#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline taxprofiler: Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed: 2 of 3 assertions failed
Parameters: default: Parameters: default#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method sratools: Parameters: --download_method sratools#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline rnaseq: Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed: 2 of 3 assertions failed
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: .devcontainer#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --skip_fastq_download: Parameters: --skip_fastq_download#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method aspera: Parameters: --download_method aspera#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline viralrecon: Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline atacseq: Parameters: --nf_core_pipeline atacseq#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline taxprofiler: Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed: 2 of 3 assertions failed
Parameters: default: Parameters: default#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method sratools: Parameters: --download_method sratools#L1
Assertion failed: 2 of 3 assertions failed
Should run without failures: Should run without failures#L1
Assertion failed: 2 of 2 assertions failed
Parameters: --nf_core_pipeline rnaseq: Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed: 2 of 3 assertions failed
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: .devcontainer#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --skip_fastq_download: Parameters: --skip_fastq_download#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method aspera: Parameters: --download_method aspera#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline viralrecon: Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline atacseq: Parameters: --nf_core_pipeline atacseq#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline taxprofiler: Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed: 2 of 3 assertions failed
Parameters: default: Parameters: default#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method sratools: Parameters: --download_method sratools#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline rnaseq: Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed: 2 of 3 assertions failed
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: .devcontainer#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --skip_fastq_download: Parameters: --skip_fastq_download#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method aspera: Parameters: --download_method aspera#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline viralrecon: Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline atacseq: Parameters: --nf_core_pipeline atacseq#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline taxprofiler: Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed: 2 of 3 assertions failed
Parameters: default: Parameters: default#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method sratools: Parameters: --download_method sratools#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline rnaseq: Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed: 2 of 3 assertions failed
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: .devcontainer#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --skip_fastq_download: Parameters: --skip_fastq_download#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method aspera: Parameters: --download_method aspera#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline viralrecon: Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline atacseq: Parameters: --nf_core_pipeline atacseq#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline taxprofiler: Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed: 2 of 3 assertions failed
Parameters: default: Parameters: default#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline rnaseq: Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed: 2 of 3 assertions failed
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: .devcontainer#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --skip_fastq_download: Parameters: --skip_fastq_download#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method aspera: Parameters: --download_method aspera#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline viralrecon: Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline atacseq: Parameters: --nf_core_pipeline atacseq#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --nf_core_pipeline taxprofiler: Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed: 2 of 3 assertions failed
Parameters: default: Parameters: default#L1
Assertion failed: 2 of 3 assertions failed
Parameters: --download_method sratools: Parameters: --download_method sratools#L1
Assertion failed: 2 of 3 assertions failed
nf-core
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

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