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remove nf-validation #1056

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remove nf-validation

remove nf-validation #1056

Triggered via pull request December 6, 2024 00:50
@drerniedrernie
opened #327
local
Status Failure
Total duration 12m 55s
Artifacts –

ci.yml

on: pull_request
Check for changes
7s
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Matrix: test
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0s
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37 errors and 38 warnings
MULTIQC_MAPPINGS_CONFIG docker NF-latest-everything
Process completed with exit code 1.
MULTIQC_MAPPINGS_CONFIG docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
PIPELINE docker NF-latest-everything
Process completed with exit code 1.
PIPELINE docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
SRA_IDS_TO_RUNINFO docker NF-latest-everything
Process completed with exit code 1.
PIPELINE_INITIALISATION docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
SRA_IDS_TO_RUNINFO docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
PIPELINE_INITIALISATION docker NF-latest-everything
Process completed with exit code 1.
UTILS_NFCORE_PIPELINE docker NF-latest-everything
Process completed with exit code 1.
UTILS_NFCORE_PIPELINE docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
SRATOOLS_PREFETCH docker NF-latest-everything
Process completed with exit code 1.
SRATOOLS_PREFETCH docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
SRATOOLS_FASTERQDUMP docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
SRATOOLS_FASTERQDUMP docker NF-latest-everything
Process completed with exit code 1.
UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
Process completed with exit code 1.
CUSTOM_SRATOOLSNCBISETTINGS docker NF-latest-everything
Process completed with exit code 1.
CUSTOM_SRATOOLSNCBISETTINGS docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
ASPERA_CLI docker NF-latest-everything
Process completed with exit code 1.
ASPERA_CLI docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
UNTAR docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
UNTAR docker NF-latest-everything
Process completed with exit code 1.
PIPELINE_COMPLETION docker NF-latest-everything
Process completed with exit code 1.
PIPELINE_COMPLETION docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
SRA_RUNINFO_TO_FTP docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
SRA_RUNINFO_TO_FTP docker NF-latest-everything
Process completed with exit code 1.
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-latest-everything
Process completed with exit code 1.
UTILS_NFVALIDATION_PLUGIN docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
UTILS_NFVALIDATION_PLUGIN docker NF-latest-everything
Process completed with exit code 1.
SRA_FASTQ_FTP docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
SRA_FASTQ_FTP docker NF-latest-everything
Process completed with exit code 1.
SRA_TO_SAMPLESHEET docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
SRA_TO_SAMPLESHEET docker NF-latest-everything
Process completed with exit code 1.
SRA docker NF-latest-everything
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
SRA docker NF-latest-everything
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
Check for changes
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
MULTIQC_MAPPINGS_CONFIG docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
PIPELINE docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
PIPELINE_INITIALISATION docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SRA_IDS_TO_RUNINFO docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
UTILS_NFCORE_PIPELINE docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SRATOOLS_PREFETCH docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SRATOOLS_FASTERQDUMP docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
CUSTOM_SRATOOLSNCBISETTINGS docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
ASPERA_CLI docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
UNTAR docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
PIPELINE_COMPLETION docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SRA_RUNINFO_TO_FTP docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
UTILS_NFVALIDATION_PLUGIN docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SRA_FASTQ_FTP docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
PIPELINE_COMPLETION docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
UTILS_NFVALIDATION_PLUGIN docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SRA_TO_SAMPLESHEET docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
UTILS_NEXTFLOW_PIPELINE docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
UTILS_NFCORE_PIPELINE docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
CUSTOM_SRATOOLSNCBISETTINGS docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SRA docker NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SRATOOLS_PREFETCH docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
ASPERA_CLI docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
UNTAR docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SRATOOLS_FASTERQDUMP docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SRA_FASTQ_FTP docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
PIPELINE_INITIALISATION docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SRA docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SRA_IDS_TO_RUNINFO docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SRA_TO_SAMPLESHEET docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
MULTIQC_MAPPINGS_CONFIG docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SRA_RUNINFO_TO_FTP docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
PIPELINE docker NF-23.04
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
confirm-pass
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636