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Launch ncov builds using the up-and-coming new nextstrain/base image #123

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Jan 27, 2021
Merged

Launch ncov builds using the up-and-coming new nextstrain/base image #123

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Launch ncov builds using the up-and-coming new nextstrain/base image
tsibley Jan 22, 2021
54ae8da
Launch secondary trial ncov builds using the up-and-coming new nextst…
tsibley Jan 22, 2021
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16 changes: 16 additions & 0 deletions bin/rebuild-staging
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Original file line number Diff line number Diff line change
Expand Up @@ -66,6 +66,22 @@ main() {

echo "Notifying Slack about rebuild."
"$bin"/notify-slack "A new staging build was submitted. Follow along in your local ncov repo with: "'```'"nextstrain build --aws-batch --attach $aws_batch_job_id ."'```'


echo "Launching a trial build for nextstrain/base:branch-python-base"

# Must use a config file because Snakemake's --config options seemingly
# don't override the profile's config files as they should. Not sure why.
tee ncov/trial.yaml <<<"
---
S3_BUCKET: nextstrain-ncov-private/branch/new-build-base-image
s3_staging_url: s3://nextstrain-staging/trial_
"

"$bin"/launch-build \
--image nextstrain/base:branch-python-base \
ncov deploy_to_staging upload \
--configfile trial.yaml
}

# Returns 1 if both files match (have identical hashes). Else returns 0.
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