fix: pin pulp<2.8, required by snakemake

Pulp 2.8.0 breaks snakemake. We need to pin until we upgrade snakemake to a version that is compatible with recent versions of pulp again. See snakemake/snakemake#2607 We might need to make a similar change to docker-base
nextstrain · Jan 12, 2024 · df585d0 · df585d0
1 parent 25bd953
commit df585d0
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/src/recipe.yaml b/src/recipe.yaml
@@ -77,6 +77,8 @@ requirements:
     - ncbi-datasets-cli
     - pango_aliasor
     - perl
+      # Pin pulp <2.8 for snakemake: https://github.com/snakemake/snakemake/issues/2607
+    - pulp <2.8
     - ruby
     - seqkit
     - snakemake <8