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neuropoly · Dec 19, 2024 · c39fcce · c39fcce
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diff --git a/README.html b/README.html
@@ -16,8 +16,8 @@
     document.documentElement.dataset.mode = localStorage.getItem("mode") || "light";
     document.documentElement.dataset.theme = localStorage.getItem("theme") || "light";
   </script>
-  <!-- 
-    this give us a css class that will be invisible only if js is disabled 
+  <!--
+    this give us a css class that will be invisible only if js is disabled
   -->
   <noscript>
     <style>
@@ -27,19 +27,19 @@
   </noscript>
 
   <!-- Loaded before other Sphinx assets -->
-  <link href="_static/styles/theme.css?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
-<link href="_static/styles/pydata-sphinx-theme.css?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
+  <link href="_static/styles/theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
+<link href="_static/styles/pydata-sphinx-theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
 
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=a746c00c" />
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     <link rel="stylesheet" type="text/css" href="_static/theme.css?v=ec48f040" />
 
   <!-- So that users can add custom icons -->
-  <script src="_static/scripts/fontawesome.js?digest=26a4bc78f4c0ddb94549"></script>
+  <script src="_static/scripts/fontawesome.js?digest=8878045cc6db502f8baf"></script>
   <!-- Pre-loaded scripts that we'll load fully later -->
-  <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549" />
-<link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549" />
+  <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
+<link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
     <script src="_static/documentation_options.js?v=c607423c"></script>
     <script src="_static/doctools.js?v=9a2dae69"></script>
@@ -353,9 +353,14 @@
 
 
   <div class="sidebar-primary-items__end sidebar-primary__section">
+      <div class="sidebar-primary-item">
+<div id="ethical-ad-placement"
+      class="flat"
+      data-ea-publisher="readthedocs"
+      data-ea-type="readthedocs-sidebar"
+      data-ea-manual="true">
+</div></div>
   </div>
-
-  <div id="rtd-footer-container"></div>
 
 
       </div>
@@ -520,8 +525,8 @@ <h1><span>⚗️</span> Lab Manual<a class="headerlink" href="#lab-manual" title
   </div>
 
   <!-- Scripts loaded after <body> so the DOM is not blocked -->
-  <script defer src="_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549"></script>
-<script defer src="_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549"></script>
+  <script defer src="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf"></script>
+<script defer src="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf"></script>
 
   <footer class="bd-footer">
   </footer>

diff --git a/_sources/data/dataset-curation.md b/_sources/data/dataset-curation.md
@@ -274,6 +274,7 @@ The [`participants.json`](https://bids-specification.readthedocs.io/en/stable/03
             "DCM": "Degenerative Cervical Myelopathy (synonymous with CSM - Cervical Spondylotic Myelopathy)",
             "MildCompression": "Asymptomatic cord compression, without myelopathy",
             "MS": "Multiple Sclerosis",
+            "PD": "Parkinson's Disease",
             "SCI": "Traumatic Spinal Cord Injury"
         }
     },

diff --git a/_static/basic.css b/_static/basic.css
@@ -55,7 +55,7 @@ div.sphinxsidebarwrapper {
 
 div.sphinxsidebar {
     float: left;
-    width: 270px;
+    width: 230px;
     margin-left: -100%;
     font-size: 90%;
     word-wrap: break-word;

diff --git a/_static/scripts/pydata-sphinx-theme.js b/_static/scripts/pydata-sphinx-theme.js
diff --git a/_static/scripts/pydata-sphinx-theme.js.map b/_static/scripts/pydata-sphinx-theme.js.map
diff --git a/_static/styles/pydata-sphinx-theme.css b/_static/styles/pydata-sphinx-theme.css
diff --git a/_static/styles/pydata-sphinx-theme.css.map b/_static/styles/pydata-sphinx-theme.css.map
diff --git a/_static/webpack-macros.html b/_static/webpack-macros.html
@@ -5,20 +5,20 @@
 
 {% macro head_pre_assets() %}
   <!-- Loaded before other Sphinx assets -->
-  <link href="{{ pathto('_static/styles/theme.css', 1) }}?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
-<link href="{{ pathto('_static/styles/pydata-sphinx-theme.css', 1) }}?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
+  <link href="{{ pathto('_static/styles/theme.css', 1) }}?digest=8878045cc6db502f8baf" rel="stylesheet" />
+<link href="{{ pathto('_static/styles/pydata-sphinx-theme.css', 1) }}?digest=8878045cc6db502f8baf" rel="stylesheet" />
 {% endmacro %}
 
 {% macro head_js_preload() %}
   <!-- So that users can add custom icons -->
-  <script src="{{ pathto('_static/scripts/fontawesome.js', 1) }}?digest=26a4bc78f4c0ddb94549"></script>
+  <script src="{{ pathto('_static/scripts/fontawesome.js', 1) }}?digest=8878045cc6db502f8baf"></script>
   <!-- Pre-loaded scripts that we'll load fully later -->
-  <link rel="preload" as="script" href="{{ pathto('_static/scripts/bootstrap.js', 1) }}?digest=26a4bc78f4c0ddb94549" />
-<link rel="preload" as="script" href="{{ pathto('_static/scripts/pydata-sphinx-theme.js', 1) }}?digest=26a4bc78f4c0ddb94549" />
+  <link rel="preload" as="script" href="{{ pathto('_static/scripts/bootstrap.js', 1) }}?digest=8878045cc6db502f8baf" />
+<link rel="preload" as="script" href="{{ pathto('_static/scripts/pydata-sphinx-theme.js', 1) }}?digest=8878045cc6db502f8baf" />
 {% endmacro %}
 
 {% macro body_post() %}
   <!-- Scripts loaded after <body> so the DOM is not blocked -->
-  <script defer src="{{ pathto('_static/scripts/bootstrap.js', 1) }}?digest=26a4bc78f4c0ddb94549"></script>
-<script defer src="{{ pathto('_static/scripts/pydata-sphinx-theme.js', 1) }}?digest=26a4bc78f4c0ddb94549"></script>
+  <script defer src="{{ pathto('_static/scripts/bootstrap.js', 1) }}?digest=8878045cc6db502f8baf"></script>
+<script defer src="{{ pathto('_static/scripts/pydata-sphinx-theme.js', 1) }}?digest=8878045cc6db502f8baf"></script>
 {% endmacro %}
diff --git a/agenda-and-calendar.html b/agenda-and-calendar.html
@@ -16,8 +16,8 @@
     document.documentElement.dataset.mode = localStorage.getItem("mode") || "light";
     document.documentElement.dataset.theme = localStorage.getItem("theme") || "light";
   </script>
-  <!-- 
-    this give us a css class that will be invisible only if js is disabled 
+  <!--
+    this give us a css class that will be invisible only if js is disabled
   -->
   <noscript>
     <style>
@@ -27,19 +27,19 @@
   </noscript>
 
   <!-- Loaded before other Sphinx assets -->
-  <link href="_static/styles/theme.css?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
-<link href="_static/styles/pydata-sphinx-theme.css?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
+  <link href="_static/styles/theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
+<link href="_static/styles/pydata-sphinx-theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
 
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=a746c00c" />
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     <link rel="stylesheet" type="text/css" href="_static/theme.css?v=ec48f040" />
 
   <!-- So that users can add custom icons -->
-  <script src="_static/scripts/fontawesome.js?digest=26a4bc78f4c0ddb94549"></script>
+  <script src="_static/scripts/fontawesome.js?digest=8878045cc6db502f8baf"></script>
   <!-- Pre-loaded scripts that we'll load fully later -->
-  <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549" />
-<link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549" />
+  <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
+<link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
     <script src="_static/documentation_options.js?v=c607423c"></script>
     <script src="_static/doctools.js?v=9a2dae69"></script>
@@ -352,9 +352,14 @@
 
 
   <div class="sidebar-primary-items__end sidebar-primary__section">
+      <div class="sidebar-primary-item">
+<div id="ethical-ad-placement"
+      class="flat"
+      data-ea-publisher="readthedocs"
+      data-ea-type="readthedocs-sidebar"
+      data-ea-manual="true">
+</div></div>
   </div>
-
-  <div id="rtd-footer-container"></div>
 
 
       </div>
@@ -747,8 +752,8 @@ <h2>Book a room<a class="headerlink" href="#book-a-room" title="Link to this hea
   </div>
 
   <!-- Scripts loaded after <body> so the DOM is not blocked -->
-  <script defer src="_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549"></script>
-<script defer src="_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549"></script>
+  <script defer src="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf"></script>
+<script defer src="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf"></script>
 
   <footer class="bd-footer">
   </footer>

diff --git a/bibliography/README.html b/bibliography/README.html
@@ -16,8 +16,8 @@
     document.documentElement.dataset.mode = localStorage.getItem("mode") || "light";
     document.documentElement.dataset.theme = localStorage.getItem("theme") || "light";
   </script>
-  <!-- 
-    this give us a css class that will be invisible only if js is disabled 
+  <!--
+    this give us a css class that will be invisible only if js is disabled
   -->
   <noscript>
     <style>
@@ -27,19 +27,19 @@
   </noscript>
 
   <!-- Loaded before other Sphinx assets -->
-  <link href="../_static/styles/theme.css?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
-<link href="../_static/styles/pydata-sphinx-theme.css?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
+  <link href="../_static/styles/theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
+<link href="../_static/styles/pydata-sphinx-theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
 
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=a746c00c" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/sphinx-book-theme.css?v=a3416100" />
     <link rel="stylesheet" type="text/css" href="../_static/sphinx-design.min.css?v=95c83b7e" />
     <link rel="stylesheet" type="text/css" href="../_static/theme.css?v=ec48f040" />
 
   <!-- So that users can add custom icons -->
-  <script src="../_static/scripts/fontawesome.js?digest=26a4bc78f4c0ddb94549"></script>
+  <script src="../_static/scripts/fontawesome.js?digest=8878045cc6db502f8baf"></script>
   <!-- Pre-loaded scripts that we'll load fully later -->
-  <link rel="preload" as="script" href="../_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549" />
-<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549" />
+  <link rel="preload" as="script" href="../_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
+<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
     <script src="../_static/documentation_options.js?v=c607423c"></script>
     <script src="../_static/doctools.js?v=9a2dae69"></script>
@@ -352,9 +352,14 @@
 
 
   <div class="sidebar-primary-items__end sidebar-primary__section">
+      <div class="sidebar-primary-item">
+<div id="ethical-ad-placement"
+      class="flat"
+      data-ea-publisher="readthedocs"
+      data-ea-type="readthedocs-sidebar"
+      data-ea-manual="true">
+</div></div>
   </div>
-
-  <div id="rtd-footer-container"></div>
 
 
       </div>
@@ -522,8 +527,8 @@ <h1><span>📚</span> Bibliography<a class="headerlink" href="#bibliography" tit
   </div>
 
   <!-- Scripts loaded after <body> so the DOM is not blocked -->
-  <script defer src="../_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549"></script>
-<script defer src="../_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549"></script>
+  <script defer src="../_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf"></script>
+<script defer src="../_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf"></script>
 
   <footer class="bd-footer">
   </footer>

diff --git a/bibliography/deep-learning.html b/bibliography/deep-learning.html
@@ -16,8 +16,8 @@
     document.documentElement.dataset.mode = localStorage.getItem("mode") || "light";
     document.documentElement.dataset.theme = localStorage.getItem("theme") || "light";
   </script>
-  <!-- 
-    this give us a css class that will be invisible only if js is disabled 
+  <!--
+    this give us a css class that will be invisible only if js is disabled
   -->
   <noscript>
     <style>
@@ -27,19 +27,19 @@
   </noscript>
 
   <!-- Loaded before other Sphinx assets -->
-  <link href="../_static/styles/theme.css?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
-<link href="../_static/styles/pydata-sphinx-theme.css?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
+  <link href="../_static/styles/theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
+<link href="../_static/styles/pydata-sphinx-theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
 
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=a746c00c" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/sphinx-book-theme.css?v=a3416100" />
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     <link rel="stylesheet" type="text/css" href="../_static/theme.css?v=ec48f040" />
 
   <!-- So that users can add custom icons -->
-  <script src="../_static/scripts/fontawesome.js?digest=26a4bc78f4c0ddb94549"></script>
+  <script src="../_static/scripts/fontawesome.js?digest=8878045cc6db502f8baf"></script>
   <!-- Pre-loaded scripts that we'll load fully later -->
-  <link rel="preload" as="script" href="../_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549" />
-<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549" />
+  <link rel="preload" as="script" href="../_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
+<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
     <script src="../_static/documentation_options.js?v=c607423c"></script>
     <script src="../_static/doctools.js?v=9a2dae69"></script>
@@ -352,9 +352,14 @@
 
 
   <div class="sidebar-primary-items__end sidebar-primary__section">
+      <div class="sidebar-primary-item">
+<div id="ethical-ad-placement"
+      class="flat"
+      data-ea-publisher="readthedocs"
+      data-ea-type="readthedocs-sidebar"
+      data-ea-manual="true">
+</div></div>
   </div>
-
-  <div id="rtd-footer-container"></div>
 
 
       </div>
@@ -825,8 +830,8 @@ <h2>Longitudinal MS Lesion Segmentation<a class="headerlink" href="#longitudinal
   </div>
 
   <!-- Scripts loaded after <body> so the DOM is not blocked -->
-  <script defer src="../_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549"></script>
-<script defer src="../_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549"></script>
+  <script defer src="../_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf"></script>
+<script defer src="../_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf"></script>
 
   <footer class="bd-footer">
   </footer>

diff --git a/bibliography/histology.html b/bibliography/histology.html
@@ -16,8 +16,8 @@
     document.documentElement.dataset.mode = localStorage.getItem("mode") || "light";
     document.documentElement.dataset.theme = localStorage.getItem("theme") || "light";
   </script>
-  <!-- 
-    this give us a css class that will be invisible only if js is disabled 
+  <!--
+    this give us a css class that will be invisible only if js is disabled
   -->
   <noscript>
     <style>
@@ -27,19 +27,19 @@
   </noscript>
 
   <!-- Loaded before other Sphinx assets -->
-  <link href="../_static/styles/theme.css?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
-<link href="../_static/styles/pydata-sphinx-theme.css?digest=26a4bc78f4c0ddb94549" rel="stylesheet" />
+  <link href="../_static/styles/theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
+<link href="../_static/styles/pydata-sphinx-theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
 
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=a746c00c" />
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     <link rel="stylesheet" type="text/css" href="../_static/theme.css?v=ec48f040" />
 
   <!-- So that users can add custom icons -->
-  <script src="../_static/scripts/fontawesome.js?digest=26a4bc78f4c0ddb94549"></script>
+  <script src="../_static/scripts/fontawesome.js?digest=8878045cc6db502f8baf"></script>
   <!-- Pre-loaded scripts that we'll load fully later -->
-  <link rel="preload" as="script" href="../_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549" />
-<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549" />
+  <link rel="preload" as="script" href="../_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
+<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
     <script src="../_static/documentation_options.js?v=c607423c"></script>
     <script src="../_static/doctools.js?v=9a2dae69"></script>
@@ -352,9 +352,14 @@
 
 
   <div class="sidebar-primary-items__end sidebar-primary__section">
+      <div class="sidebar-primary-item">
+<div id="ethical-ad-placement"
+      class="flat"
+      data-ea-publisher="readthedocs"
+      data-ea-type="readthedocs-sidebar"
+      data-ea-manual="true">
+</div></div>
   </div>
-
-  <div id="rtd-footer-container"></div>
 
 
       </div>
@@ -554,8 +559,8 @@ <h2>Resources<a class="headerlink" href="#resources" title="Link to this heading
   </div>
 
   <!-- Scripts loaded after <body> so the DOM is not blocked -->
-  <script defer src="../_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549"></script>
-<script defer src="../_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549"></script>
+  <script defer src="../_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf"></script>
+<script defer src="../_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf"></script>
 
   <footer class="bd-footer">
   </footer>