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@neherlab

neherlab

Computational biology at the Biozentrum, Basel

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  1. covid19_scenarios covid19_scenarios Public

    Models of COVID-19 outbreak trajectories and hospital demand

    JavaScript 1.4k 350

  2. treetime treetime Public

    Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

    Jupyter Notebook 238 57

  3. pan-genome-analysis pan-genome-analysis Public

    Processing pipeline for pan-genome visulization and exploration

    Python 138 39

  4. SARS-CoV-2_variant-reports SARS-CoV-2_variant-reports Public

    Informal summaries of notable SARS-CoV-2 lineages

    108 12

  5. pangraph pangraph Public

    A bioinformatic toolkit to align genome assemblies into pangenome graphs

    C 101 7

  6. pan-genome-visualization pan-genome-visualization Public

    Forked from wdingx/pan-genome-visualization

    Visualization of the pan-genome output by panX

    JavaScript 63 14

Repositories

Showing 10 of 94 repositories
  • data-to-physical-models-in-biology-materials Public

    Materials for the course "From Data to Physicsal models in Biology" -- Part Neher

    neherlab/data-to-physical-models-in-biology-materials’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 31, 2025
  • neherlab/phylogeography’s past year of commit activity
    Python 0 0 0 0 Updated Mar 30, 2025
  • neherlab/nextclade_data_workflows’s past year of commit activity
    Python 4 1 11 1 Updated Mar 27, 2025
  • pangraph Public

    A bioinformatic toolkit to align genome assemblies into pangenome graphs

    neherlab/pangraph’s past year of commit activity
    C 101 MIT 7 9 4 Updated Mar 27, 2025
  • ncov-simple Public
    neherlab/ncov-simple’s past year of commit activity
    Python 2 1 9 1 Updated Mar 26, 2025
  • treetime Public

    Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

    neherlab/treetime’s past year of commit activity
    Jupyter Notebook 238 MIT 57 32 6 Updated Mar 20, 2025
  • rsv_intrahost_2024 Public Forked from nextstrain/rsv

    Workflow for RSV analyses on Nextstrain.org

    neherlab/rsv_intrahost_2024’s past year of commit activity
    Python 0 3 0 0 Updated Mar 6, 2025
  • SARS-CoV-2_variant-reports Public

    Informal summaries of notable SARS-CoV-2 lineages

    neherlab/SARS-CoV-2_variant-reports’s past year of commit activity
    108 12 0 0 Updated Feb 27, 2025
  • coolify-test Public
    neherlab/coolify-test’s past year of commit activity
    Smarty 0 0 0 1 Updated Feb 10, 2025
  • CCHFV Public
    neherlab/CCHFV’s past year of commit activity
    Python 0 0 0 0 Updated Feb 7, 2025

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