v1.10.0

Changed

• Tensorflow logging level no longer set from Python.
• spoa and parasail are now strict requirements.

Fixed

• Sort VCF before annotating in medaka_haploid_variant.
• Ignore errors when deleting temporary files.
• The output of the first POA run not being used in the second iteration in smolecule command.

Added

• Support for Python 3.11.
• --spoa_min_coverage option to smolecule command.

Removed

• Support for Python 3.7.