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Brain Imaging Diffusion Group (BRIDGE) Lab

BRIDGE lab specializes in cutting-edge analysis of MRI images. We develop both algorithms and pipelines to extract meaningful metrics from brain MRI images

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  1. PyDesigner PyDesigner Public

    A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tu…

    Python 28 7

  2. DKE DKE Public

    The Diffusional Kurtosis Estimator (DKE) is software for processing Diffusional Kurtosis Imaging (DKI) data

    MATLAB 8 4

  3. dTractSeg dTractSeg Public

    A TractSeg pipeline compatible with PyDesigner outputs

    Jupyter Notebook 5

  4. FBWM FBWM Public

    Fiber ball white matter modeling

    MATLAB 1 2

  5. Mice-ROI-Processing Mice-ROI-Processing Public

    Script designed to extract parameters from DKI maps based on ImageJ-drawn ROIs

    MATLAB 1 1

  6. mcr-v97 mcr-v97 Public

    Matlab (C) Runtime for Matlab R2019b (v.9.7) in Docker

    Dockerfile 1 1

Repositories

Showing 10 of 21 repositories
  • PyDesigner Public

    A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

    Python 28 7 9 (1 issue needs help) 3 Updated Apr 12, 2025
  • ci-cd Public

    CI/CD scripts and builds for MUSC-BRIDGE application development

    0 0 0 0 Updated Apr 12, 2025
  • DP-DKI Public
    Jupyter Notebook 0 0 0 0 Updated Mar 7, 2025
  • miQglia Public

    A set of MATLAB scripts for quantification of microglia images acquired through brightfield microscopy.

    MATLAB 0 MPL-2.0 0 0 0 Updated Jan 3, 2023
  • FBWM Public

    Fiber ball white matter modeling

    MATLAB 1 2 1 0 Updated Mar 9, 2022
  • DKE Public

    The Diffusional Kurtosis Estimator (DKE) is software for processing Diffusional Kurtosis Imaging (DKI) data

    MATLAB 8 4 0 0 Updated Mar 2, 2022
  • ARTDock Public

    Docker container for Babak Ardekani's automatic registration toolbox

    Jupyter Notebook 0 MPL-2.0 0 1 0 Updated Feb 4, 2022
  • dTractSeg Public

    A TractSeg pipeline compatible with PyDesigner outputs

    Jupyter Notebook 5 MPL-2.0 0 0 0 Updated Aug 28, 2020
  • TractSeg Public Forked from MIC-DKFZ/TractSeg

    Automatic White Matter Bundle Segmentation

    Python 0 Apache-2.0 74 0 0 Updated Jun 5, 2020
  • makedt6frompyd Public

    Docker container to convert PyDesigner outputs to AFQ's dt6.mat

    Dockerfile 0 MPL-2.0 0 0 0 Updated May 7, 2020
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