SARS First Release

Merge pull request #44 from mrc-ide/pipeline

Continuous Integration

Ebola review code

Code accompanying the Ebola paper (in press)
To test this code, clone the repo, navigate to the directory and do

Rscript ebola_workflow.R -l "../"

where "../" can be replaced by any temporary location on your machine, outside priority-pathogens root directory.

Note to contributors: any edits to the code should be tested against the outputs produced from this point of the repo.

lassa_branch_release

This release will run for Windows-users only. Functionality for Mac-users to be provided shortly.