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omim_300232, ORPHA:168448, and ORPHA:83629 #1019

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maglott opened this issue Dec 4, 2019 · 5 comments · Fixed by #1078
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omim_300232, ORPHA:168448, and ORPHA:83629 #1019

maglott opened this issue Dec 4, 2019 · 5 comments · Fixed by #1078
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obsolete This includes both obsolete and merge requests Ordo-xref question

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@maglott
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maglott commented Dec 4, 2019

OMIM recently moved https://www.omim.org/entry/300660 into omim_300232.
How should these concepts now be sorted out?

@nicolevasilevsky nicolevasilevsky self-assigned this Dec 6, 2019
@nicolevasilevsky nicolevasilevsky added the obsolete This includes both obsolete and merge requests label Dec 12, 2019
@nicolevasilevsky
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Sounds like we should obsolete MONDO_0010394 'leukoencephalopathy-metaphyseal chondrodysplasia syndrome'
and replace it with MONDO_0010275 'spondyloepimetaphyseal dysplasia, Bieganski type'

@nicolevasilevsky
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@ana-rath-orphanet and @annieolry
See above, OMIM merged these two terms. Does Orphanet want to consider retiring
ORPHA:83629 Leukoencephalopathy-spondylometaphyseal dysplasia syndrome
and merged it with
ORPHA:168448 Spondyloepimetaphyseal dysplasia, Bieganski type

@annieolry
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I passed on to the team here. We will let you know asap.

@AntoineMarmignon
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AntoineMarmignon commented Jan 16, 2020

Hi, I am Antoine from Orphanet, in charge of genetic info and OMIM alignement
If I understand correctly we already did the opposite, obsolete "Spondyloepimetaphyseal dysplasia, Bieganski type" and merge it with "Leukoencephalopathy-spondylometaphyseal dysplasia syndrome"

The Orpha168448 has been deprecated to Orpha83629
On the website you can see :
"This disease has been moved to Leukoencephalopathy-spondylometaphyseal dysplasia syndrome"
The OMIM phenotype 300232 is linked to Orpha83629 only now.

@nicolevasilevsky
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@AntoineMarmignon - We went ahead and followed OMIM: they moved https://www.omim.org/entry/300660 into omim_300232.

nicolevasilevsky added a commit that referenced this issue Jan 28, 2020
…imetaphyseal dysplasia, Bieganski type'. addresses #1019
nicolevasilevsky added a commit that referenced this issue Feb 17, 2020
…imetaphyseal dysplasia, Bieganski type'. addresses #1019
nicolevasilevsky added a commit that referenced this issue Feb 17, 2020
redo edits for #1019

revise xref to MONDO:obsoleteEquivalent for MONDO_0010275 'spondyloepimetaphyseal dysplasia, Bieganski type'. addresses #1019

per comment on #1078

let me know if I did this wrong.
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