fix(catalogue): add UMCG template loader (#4466)

molgenis · Nov 21, 2024 · 7e49563 · 7e49563
1 parent 0847fc9
commit 7e49563
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Showing 4 changed files with 12 additions and 6 deletions.
diff --git a/apps/central/src/components/SchemaCreateModal.vue b/apps/central/src/components/SchemaCreateModal.vue
@@ -141,6 +141,7 @@ export default {
         "DATA_CATALOGUE",
         "DATA_CATALOGUE_COHORT_STAGING",
         "DATA_CATALOGUE_NETWORK_STAGING",
+        "UMCG_COHORT_STAGING",
         "UMCU_COHORTS_STAGING",
         "RD3",
         "JRC_COMMON_DATA_ELEMENTS",

diff --git a/backend/molgenis-emx2-datamodels/src/main/java/org/molgenis/emx2/datamodels/DataModels.java b/backend/molgenis-emx2-datamodels/src/main/java/org/molgenis/emx2/datamodels/DataModels.java
@@ -9,10 +9,11 @@
 public class DataModels {
 
   public enum Profile {
+    DATA_CATALOGUE("_profiles/DataCatalogue.yaml"),
     DATA_CATALOGUE_COHORT_STAGING("_profiles/CohortsStaging.yaml"),
     DATA_CATALOGUE_NETWORK_STAGING("_profiles/NetworksStaging.yaml"),
     DATA_CATALOGUE_AGGREGATES("_profiles/DataCatalogueAggregates.yaml"),
-    DATA_CATALOGUE("_profiles/DataCatalogue.yaml"),
+    UMCG_COHORT_STAGING("_profiles/UMCGCohortsStaging.yaml"),
     UMCU_COHORTS_STAGING("_profiles/UMCUCohorts.yaml"),
     FAIR_DATA_HUB("_profiles/FAIRDataHub.yaml"),
     RD3("_profiles/RD3.yaml"),

diff --git a/data/_demodata/applications/datacatalogue_cohortstaging/Contacts.csv b/data/_demodata/applications/datacatalogue_cohortstaging/Contacts.csv
@@ -1,2 +1,2 @@
-resource,role,first name,last name,prefix,initials,title,organisation,email,orcid,homepage,photo,photo_filename,expertise
-testCohort,"Principal Investigator,Primary contact",Morris,Swertz,,,,UMCG,m.a.swertz@rug.nl,0000-0002-0979-3401,https://www.rug.nl/staff/m.a.swertz/,,,edit
+resource,role,first name,last name,prefix,initials,title,organisation,email,orcid,homepage,photo,photo_filename,expertise,statement of consent personal data,statement of consent email
+testCohort,"Principal Investigator,Primary contact",Morris,Swertz,,,,UMCG,m.a.swertz@rug.nl,0000-0002-0979-3401,https://www.rug.nl/staff/m.a.swertz/,,,edit,TRUE,TRUE
diff --git a/data/_profiles/UMCGCohortsStaging.yaml b/data/_profiles/UMCGCohortsStaging.yaml
@@ -1,13 +1,17 @@
 ---
-name: Staging area for filling out UMCG cohort metadata
+name: UMCGCohortsStaging
+description: "Staging area for filling out UMCG cohort metadata"
 
 profileTags: UMCGCohortsStaging
 
-# demoData: _demodata/applications/datacatalogue
+demoData: _demodata/applications/datacatalogue_cohortstaging
 
 #settings: _settings/datacatalogue
 
 # special options
-# setViewPermission: anonymous
 ontologiesToFixedSchema: CatalogueOntologies
 setFixedSchemaViewPermission: anonymous
+firstCreateSchemasIfMissing:
+  - name: UMCG
+    profile: _profiles/DataCatalogue.yaml
+    importDemoData: false