Release 3.4.2 #1936

github-actions · 2023-08-25T23:10:39Z

FloPy 3.4.2

This is a patch release including bug fixes and minor non-functional refactoring cherry-picked from develop.

Bug fixes

fix(binaryfile/gridutil): Avoid numpy deprecation warnings (fix(binaryfile): avoid numpy deprecation warnings #1868). Committed by w-bonelli on 2023-07-12.
fix(binary): Fix binary header information (fix(binary): fix binary header information #1877). Committed by jdhughes-usgs on 2023-07-16.
fix(time series): Fix for multiple time series attached to single package (bug: Error when loading an mf6 model with time series package #1867) (fix(time series): fix for multiple time series attached to single package (#1867) #1873). Committed by spaulins-usgs on 2023-07-20.
fix(check): Check now works properly with confined conditions (bug: Check Laytyp in MFsimulation.load with verify_data=True #1880) (fix(check): check now works properly with confined conditions (#1880) #1882). Committed by spaulins-usgs on 2023-07-27.
fix(mtlistfile): Fix reading MT3D budget (Fixes a bug reading MT3MS-Listfiles #1899). Committed by Ralf Junghanns on 2023-08-03.
fix(check): Updated flopy's check to work with cellid -1 values (fix(check): Updated flopy's check to work with cellid -1 values #1885). Committed by spaulins-usgs on 2023-08-06.
fix(BaseModel): Don't suppress error if exe not found (fix(BaseModel): don't suppress error if exe not found #1901). Committed by w-bonelli on 2023-08-07.
fix(keyword data): Optional keywords (fix(keyword data): optional keywords (#1909) #1920). Committed by spaulins-usgs on 2023-08-16.
fix(GridIntersect): Combine list of geometries using unary_union (fix(GridIntersect): combine list of geometries using unary_union #1923). Committed by Mike Taves on 2023-08-21.
fix(gridintersect): Add multilinestring tests (fix(gridintersect): add multilinestring tests #1924). Committed by Davíd Brakenhoff on 2023-08-21.
fix(binary file): Was writing binary file information twice to external files (External Binary Arrays being written twice #1925) (fix(binary file): Was writing binary file information twice to external files (#1925) #1928). Committed by scottrp on 2023-08-25.
fix(ParticleData): Fix docstring, structured default is False (fix(ParticleData): fix docstring, structured default is False #1935). Committed by w-bonelli on 2023-08-25.

Refactoring

refactor(_set_neighbors): Check for closed iverts and remove closing ivert (update(_set_neighbors): check for closed iverts and remove closing ivert #1876). Committed by Joshua Larsen on 2023-07-14.
refactor(dependencies): Constrain sphinx >=4 (docs: require sphinx>=4 to fix RTD build #1898). Committed by w-bonelli on 2023-08-02.
refactor(dependencies): Constrain sphinx-rtd-theme >=1 (refactor(dependencies): constrain sphinx-rtd-theme >=1 #1900). Committed by w-bonelli on 2023-08-03.

* use ndarray.item() to retrieve single elements * update gridutil get_disu_kwargs() docstrings

…ert (#1876)

* modify pip upgrade in rtd workflow Replaces PR #1848 (Close #1848)

…kage (#1867) (#1873) Co-authored-by: scottrp <45947939+scottrp@users.noreply.github.com>

…#1882) * fix(check): check now works properly with confined conditions (#1880) * github workflows undo --------- Co-authored-by: scottrp <45947939+scottrp@users.noreply.github.com>

* fix character span reading tkstp with a regex match * skip particle information reading GW-Mass Budget Co-authored-by: Ralf Junghanns <ralf@junghanns.it>

* fix(test): should be a complete grid * fix(model grid): Always resync mf2005 grids * Revert "fix(model grid): Always resync mf2005 grids" * fix(grid idomain): grid idomain now defaults to all 1's for MF6 only * fix(notebook): notebook contained out of bounds cellid * fix(modelgrid): always force modelgrid to resync until an idomain array is provided --------- Co-authored-by: scottrp <45947939+scottrp@users.noreply.github.com>

* warn at init/load time if exe not found, raise error at model run time

Flopy allows some keywords to be excluded from recarrays, like "FILEIN". This fix makes sure that optional keywords, like "MIXED" are not excluded from recarrays. Since they are optional their presence adds information to the recarray and they therefore can not be excluded. Co-authored-by: scottrp <45947939+scottrp@users.noreply.github.com>

- tests for example in #1922

…al files (#1925) (#1928)

…ate changelog

wpbonelli and others added 17 commits August 25, 2023 18:11

fix(binaryfile/gridutil): avoid numpy deprecation warnings (#1868)

b1e6b77

* use ndarray.item() to retrieve single elements * update gridutil get_disu_kwargs() docstrings

update(_set_neighbors): check for closed iverts and remove closing iv…

89fa273

…ert (#1876)

fix(binary): fix binary header information (#1877)

aa74356

* modify pip upgrade in rtd workflow Replaces PR #1848 (Close #1848)

fix(time series): fix for multiple time series attached to single pac…

021159b

…kage (#1867) (#1873) Co-authored-by: scottrp <45947939+scottrp@users.noreply.github.com>

fix(check): check now works properly with confined conditions (#1880) (…

7e8a0cb

…#1882) * fix(check): check now works properly with confined conditions (#1880) * github workflows undo --------- Co-authored-by: scottrp <45947939+scottrp@users.noreply.github.com>

refactor(dependencies): constrain sphinx >=4 (#1898)

364b4d1

refactor(dependencies): constrain sphinx-rtd-theme >=1 (#1900)

ee92091

fix(mtlistfile): fix reading MT3D budget (#1899)

2222245

* fix character span reading tkstp with a regex match * skip particle information reading GW-Mass Budget Co-authored-by: Ralf Junghanns <ralf@junghanns.it>

fix(BaseModel): don't suppress error if exe not found (#1901)

82bc3f1

* warn at init/load time if exe not found, raise error at model run time

fix(GridIntersect): combine list of geometries using unary_union (#1923)

22205f4

fix(gridintersect): add multilinestring tests (#1924)

672d6be

- tests for example in #1922

fix(binary file): Was writing binary file information twice to extern…

d1c6071

…al files (#1925) (#1928)

fix(ParticleData): fix docstring, structured default is False (#1935)

00e99c1

chore: import import_optional_dependency in mtlistfile.py

9b036f4

ci(release): set version to 3.4.2, update plugins from DFN files, upd…

16d3dae

…ate changelog

wpbonelli marked this pull request as ready for review August 25, 2023 23:16

wpbonelli merged commit 1f06875 into master Aug 25, 2023

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Release 3.4.2 #1936

Release 3.4.2 #1936

github-actions bot commented Aug 25, 2023 •

edited by wpbonelli

Loading

Release 3.4.2 #1936

Release 3.4.2 #1936

Conversation

github-actions bot commented Aug 25, 2023 • edited by wpbonelli Loading

FloPy 3.4.2

Bug fixes

Refactoring

github-actions bot commented Aug 25, 2023 •

edited by wpbonelli

Loading