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Release 3.3.2 #1011

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Oct 26, 2020
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e4d9397
initial v3.2.13 release candidate
jdhughes-usgs Jun 1, 2019
f0a7214
Fix(plotting): Bug fixes for issues #587 and #588 (#589)
jlarsen-usgs Jun 7, 2019
2b912da
suppressing error when proj4_str is None (#590)
mnfienen Jun 8, 2019
122ccd1
fix creep of btn obs loactions when reading and writing (#592)
briochh Jun 10, 2019
221145a
Zero-based integers for select ModflowFlwob variables (#596)
jbellino-usgs Jun 18, 2019
81b3904
fix(mfuzf): enforce boolean values for several uzf option arguments (…
langevin-usgs Jun 20, 2019
48fb174
feat(export_contourf): export filled contours to shapefile (#599)
langevin-usgs Jun 21, 2019
5547dc9
Fix(mbase.py): laytyp property method call to "UPW" package. (#601)
jlarsen-usgs Jun 22, 2019
b326ab2
Add load function to ModflowFlwob (#598)
jbellino-usgs Jun 24, 2019
88d5dff
fix(mtuzt): iuzbnd improperly generated (#605)
emorway-usgs Jul 2, 2019
93cf91b
Update version_changes.md
langevin-usgs Jul 2, 2019
824ddb8
fix(mfsfr2.py): substituted graph for all_segments to improve perform…
aleaf Jul 2, 2019
6943cbb
Fix(contour_array_cvfd): fix for masked value crash issue using trico…
jlarsen-usgs Jul 11, 2019
e4f0222
fix(util_list.py): get_dataframe() iterating thru nper instead of dat…
aleaf Jul 11, 2019
5e438f2
fix(mtuzf1): a user comment on same line as nuzgag not processed corr…
emorway-usgs Jul 12, 2019
7e0a80d
fix(modflowpy#615): plotutil masked_values hnoflo, hdry fix (#618)
jlarsen-usgs Jul 22, 2019
4aa9661
refactor(namfile): whitespace in NAM file and MFList output files (#622)
mwtoews Jul 30, 2019
aea015d
fix(memory): "Cannot allocate memory" error for Python 2.7 on non-Win…
mwtoews Jul 30, 2019
a0edd54
fix(reference): resolve UnboundLocalError with crs property (#608)
mwtoews Aug 1, 2019
27e8bc0
fix(mf6): Fixes for #603, #606, #614, and #616 (#620)
spaulins-usgs Aug 1, 2019
648eeba
fix(export_contourf): tidy local variable overuse for Python 2.7 (#625)
mwtoews Aug 6, 2019
2eea963
fix(MFList): older numpy needs file in binary mode for writetxt (#626)
mwtoews Aug 6, 2019
fde9bc7
feat(intersect): add grid intersection functionality (#610)
dbrakenhoff Aug 6, 2019
4dcc79e
fix(travis 2.7): Travis memory errors (#627)
spaulins-usgs Aug 8, 2019
286252a
feat(mf6 rename all packages method + copy support (#591))
spaulins-usgs Aug 15, 2019
6c407c0
Fix(unstructured grid capabilities): fix array masking for CVFD grids…
jlarsen-usgs Aug 16, 2019
5c3f984
feat(sub): Add IDBIT option to SUB for MODFLOW-2005 option (#632)
jdhughes-usgs Aug 17, 2019
ac38a1e
feat(mflistreader): read WEL Reductions from List File (#630)
ConstableCatnip Aug 17, 2019
0f8007c
Feat(rasters.py): Add raster intersection and resampling features to …
jlarsen-usgs Aug 28, 2019
842c89b
fix(evt): etvr not evtr in evt package (#635)
briochh Aug 28, 2019
41dd80d
fix(sfr): remove sensitivity to SFR reach_data (ds2) rec array order.…
briochh Aug 28, 2019
ac259c7
fix(mfmnw2): bug fix for writing multiple stress periods
aymanalz Sep 3, 2019
32309e2
feat(GridIntersect): import GridIntersect from __init__ (#640)
jtwhite79 Sep 6, 2019
c7bb2c2
fix(gridintersect): removed matplotlib dependency (#643)
langevin-usgs Sep 9, 2019
2434d2d
fix(mflistfile): parse immobile components from mt3d listfile (#644)
briochh Sep 15, 2019
4ef4f3b
fix(gridgen): changed sr usage to modelgrid
langevin-usgs Sep 15, 2019
2ab82f6
refactor(vdf): shut off density limiters as default (#646)
langevin-usgs Sep 15, 2019
5914bbe
docs(dfn): update some MODFLOW 6 variable descriptions (#648)
langevin-usgs Sep 17, 2019
5bdd2e6
fix(mtbtn): options from load method ignored (#649)
mwtoews Sep 18, 2019
476c861
fix(notebooks): add missing figure (#650)
langevin-usgs Sep 18, 2019
7b078ca
fix(CellBudgetFil): get_ts() wasnt setting totim in the result contai…
jtwhite79 Sep 26, 2019
80a8a7f
Update(export): Updated the export method to accept modelgrid in **kw…
jlarsen-usgs Sep 26, 2019
7d1bc90
fix(tutorial2): zorder keyword in clabel no longer supported (#654)
langevin-usgs Sep 27, 2019
d0a4f47
Fix(mfuzf1): fix read and write dataset 4b when specifysurfk option i…
jlarsen-usgs Oct 3, 2019
71e17bb
fix(mflak): allow mflak class to use -1 as a flag for using previous …
aymanalz Oct 3, 2019
9017fa8
fix(SpatialReference): fix coordinate information being passed to Spa…
jlarsen-usgs Oct 5, 2019
c9984d0
feat(PlotCrossSection): add geographic_coords flag to PlotCrossSectio…
jlarsen-usgs Oct 8, 2019
c305e95
Add feature to allow 'with' context statement to read Head/CellBudget…
mwtoews Oct 9, 2019
3f9c9e7
refactor(modelgrid): model grid caching change (#667)
spaulins-usgs Oct 9, 2019
7dc1ec8
fix(ModflowUzf1): load datasets if NUZF1..4 >= 0 (#668)
jlarsen-usgs Oct 9, 2019
0afbf2d
fix(Python 2): use a few aliases for exceptions (#672)
mwtoews Oct 11, 2019
32f32c1
refactor(load methods): avoid ResourceWarning with unclosed files (#673)
mwtoews Oct 11, 2019
9ea47a4
refactor(travis): use script files rather than awkward YAML file (#676)
mwtoews Oct 16, 2019
dc87007
feature(ci): check Python code with flake8 (#677)
mwtoews Oct 16, 2019
ff43c7c
fix(gridgen): fixed writing of mf6 disu package (#680)
langevin-usgs Oct 17, 2019
bbe3f55
fix(ModflowSfr2.load): don't try to read datasets 6b,c in cases where…
aleaf Oct 18, 2019
da3ad6f
Resolve bugs related to F821 undefined name 'name' (#686)
mwtoews Oct 20, 2019
edb15b7
fix(flake8 code F811): redefinition of unused 'name' (#688)
mwtoews Oct 20, 2019
38d96d3
Fix(#675): hfb load parameters when Factor is excluded (#685)
jlarsen-usgs Oct 20, 2019
b5f8cf7
feat: support for copy.copy() and copy.deepcopy() with python 3.5+ (#…
aleaf Oct 21, 2019
2d76758
fix(ulstrd): lists for wel, drn, ghb, etc. not always loaded correctl…
langevin-usgs Oct 23, 2019
cb02669
tests(t004): fix small issue that only occurs on Windows (#695)
langevin-usgs Oct 24, 2019
20d881b
refactor(gridintersect): wrap shapely imports in try/except (#698)
langevin-usgs Oct 26, 2019
a3742dd
refactor(dis): removed dis.read_from_cnf() method. (#699)
langevin-usgs Oct 27, 2019
134557a
feat(#693) and fix(#691) (#696)
spaulins-usgs Oct 28, 2019
7e4cd89
fix(flake8 code W605): invalid escape sequence '\s' (or similar) (#700)
mwtoews Oct 29, 2019
151625a
fix(EpsgReference): complete methods for expected operation (#702)
mwtoews Oct 29, 2019
fb67758
refactor(SfrFile): detect other column names, remove methods (#708)
mwtoews Nov 1, 2019
4a9ea1a
feat(nper/sim): allow stress periods beyond nper, and allow setting s…
spaulins-usgs Nov 1, 2019
214d5a1
refactor(mfsfr2): format floats as '{:.8g}' with older NumPy versions…
mwtoews Nov 5, 2019
06343a7
fix(#707): Loading Optimized for MFLists in Special Cases (#711)
spaulins-usgs Nov 5, 2019
bc4e54f
doc(pangeo): add support for pangeo to run example notebooks (#713)
jdhughes-usgs Nov 5, 2019
7cbc489
doc(pangeo): update support for pangeo to run example notebooks (#714)
jdhughes-usgs Nov 6, 2019
09e8422
fix(irch): converted irch to be one based (#716)
jtwhite79 Nov 7, 2019
d25b67d
fix(modflowpy#720): explicitly set shapefile record dtypes in write_g…
jlarsen-usgs Nov 14, 2019
c7856a5
refactor(namefile): format values with str() and remove extra "; " (#…
mwtoews Nov 14, 2019
9f06345
fix(mfsfr2.py): isfropt and icalc read/write logic (#723)
jlarsen-usgs Nov 15, 2019
f8b26c5
fix(mflist optimization): The mflist optimization code crashed when a…
spaulins-usgs Nov 15, 2019
52ef51d
feat(vtk) updated vtk export capabilities in flopy. (#717)
martindjm Nov 15, 2019
3d83667
Merge remote-tracking branch 'origin/master' into develop
jdhughes-usgs Nov 18, 2019
9dc3281
initial develop branch for release 3.3.0
jdhughes-usgs Nov 18, 2019
46a7dad
docs: fix typo and small mistakes (#729)
Nov 19, 2019
d0225ab
doc(mffhb): correct minor mistake in docstring (#726)
rabbl Nov 19, 2019
84b133c
fix(binder): convert to mybinder.org (#731)
jdhughes-usgs Nov 19, 2019
abccfb7
refactor(setup/ci): require and test Python 3.5, 3.6, 3.7 and 3.8 (#728)
mwtoews Nov 19, 2019
a1e0872
docs: clarify statement and add whitespace (#735)
Nov 22, 2019
a657a84
fix(flake8 code F632): use '==' instead of 'is' (#734)
mwtoews Nov 22, 2019
c03821d
fix(mnw2): fix issues with files with empty lines (#736)
jdhughes-usgs Nov 22, 2019
8c118ec
fix(mnw2): fix issues causing random failures on python 3.5 (#739)
jdhughes-usgs Nov 23, 2019
935db67
fix(ModflowDis.sr): rotate model prior to calculating xll and yll fro…
jlarsen-usgs Nov 25, 2019
0341a29
mnw2 missing itmp when zero (#742)
ConstableCatnip Dec 3, 2019
88703c2
fix(model relative path): always register model prior to setting mode…
scottrp Dec 4, 2019
723c7e9
CI(t007): patch for python 3.8 (#751)
jdhughes-usgs Dec 10, 2019
677c1d4
Update flopy author list in software citation (#750)
jentjr Dec 10, 2019
9c866fd
refact(docstrings): refactored docstrings in mfsimulation (#752)
spaulins-usgs Dec 11, 2019
14b0ddf
Update(plotting): update plotting examples and fixes for mf6 bugs (#755)
jlarsen-usgs Dec 11, 2019
cb4101a
fix(mflist): fixed record shape in get_empty; test add_record (#758)
mwtoews Dec 12, 2019
6be7fdc
fix(boundnames): Fixed problem loading boundnames (#757)
spaulins-usgs Dec 12, 2019
f83f382
fix(mtssm): fix assumption that transient NSS data appears in first s…
emorway-usgs Dec 12, 2019
aa4b667
fix(upw): keyword for vertical K (#746)
ConstableCatnip Dec 12, 2019
331319b
fix(dfns): update MODFLOW 6 dfns for next flopy (3.3.0) and mf6 (6.1.…
jdhughes-usgs Dec 12, 2019
6e94b27
refactor(release): update make-release script to generate author name…
jdhughes-usgs Dec 12, 2019
0d27887
ci(exes): update executables version to 3.0 (#761)
jdhughes-usgs Dec 14, 2019
dffa03e
release: merge v3.3.0
jdhughes-usgs Dec 15, 2019
29e927f
release: update develop to preliminary status
jdhughes-usgs Dec 15, 2019
8d35383
readme: add anaconda badges (#763)
jdhughes-usgs Dec 15, 2019
51d8064
fix(Mflist): allow None as a list entry (#765)
langevin-usgs Dec 16, 2019
cf3586f
fix(replace package): When a second package of the same type is added…
spaulins-usgs Dec 18, 2019
ec71e6c
fix(repeating blocks) (#771)
spaulins-usgs Dec 30, 2019
73f7051
fix(vtk): change in export_model when packages_names is None (#770)
rodrperezi Dec 30, 2019
088f147
feat(mf6 checker): input data check for mf6 (#779)
spaulins-usgs Jan 16, 2020
f7886e2
fix(mtssm.py): handle 1st stress period with incrch equal to -1 (#780)
emorway-usgs Jan 16, 2020
061c727
fix(gridgen): x, y center was not correct for rotated grids (#783)
langevin-usgs Jan 17, 2020
102d25b
fix(remove_package): fixed remove_package to rebuild namefile recarra…
spaulins-usgs Jan 17, 2020
491f4fe
feat(zb netcdf): zonebudget netcdf export support added (#781)
jlarsen-usgs Jan 17, 2020
84ee8a7
fix(mf6): update create packages to support additional models (#790)
jdhughes-usgs Jan 24, 2020
6ac9a20
refactor(grid_intersect): fixes for shapely updates
dbrakenhoff Jan 30, 2020
ab8120b
fix(vtk): change in export_cbc output file name (#795)
rodrperezi Jan 30, 2020
469727b
feat(disl grids): support for 1d vertex grids. fix for writing gridli…
spaulins-usgs Feb 4, 2020
207cd1e
feat(plot_bc): updated plot_bc for MAW, UZF, SFR, and multiple bc pac…
jlarsen-usgs Feb 11, 2020
0d15251
fix(flopy3_MT3DMS_examples.ipynb): match constant heads to original p…
emorway-usgs Feb 11, 2020
4a885a1
fix(mflist): default value not working (#812)
langevin-usgs Feb 13, 2020
f3136a2
fix(build_exes.py): fix bugs for Windows (#810) (#813)
etiennebresciani Feb 18, 2020
3618278
docs(README.md and CONTRIBUTING.md): fix a few instruction issues (#814)
etiennebresciani Feb 18, 2020
65e8ada
fix(flopy3_MT3DMS_examples.ipynb): wrong indices were indexed (#815)
emorway-usgs Feb 20, 2020
b6c9a3a
Fix(ModflowSfr2.export): Update ModflowSfr2.export() to use Grid inst…
jlarsen-usgs Feb 29, 2020
90a498e
Fix quasi3d plotting (#819)
rubencalje Mar 2, 2020
1284871
feat(vectors): vector plots when stresses applied along boundaries (#…
langevin-usgs Mar 5, 2020
4bfab91
fix:(#830): handling 'none' cellids in SFR package (#834)
spaulins-usgs Mar 25, 2020
0867b34
refactor and fix(vtk): improving code and fixing issues
etiennebresciani Mar 28, 2020
13c1dd2
feat(vtk): export in .vti and .vtr when possible
etiennebresciani Mar 28, 2020
9a1b9e3
fix(pyproj): pyproj.Proj's errcheck keyword option not reliable (#837)
mwtoews Mar 29, 2020
48c7ef7
Merge pull request #836 from etiennebresciani/vtk_exp
langevin-usgs Mar 29, 2020
aa9f314
fix(vtk): issues related to nan and type cast
etiennebresciani Mar 31, 2020
b975368
feat(vtk): export vectors to vtk
etiennebresciani Mar 31, 2020
59cac5c
fix(str): add consistent fixed and free format approach (#838)
jdhughes-usgs Mar 31, 2020
1f322f0
fix(mflmt.py): Clean up docstring for package_flows argument in LMT
emorway-usgs Mar 31, 2020
b36e0e0
Merge pull request #841 from etiennebresciani/vtk_exp1
langevin-usgs Mar 31, 2020
abef931
Merge pull request #842 from emorway-usgs/fix-lmtDocStr
langevin-usgs Mar 31, 2020
fb942b4
feat(netcdf): use modern features from pyproj>=2.2.0 (#840)
mwtoews Mar 31, 2020
14040ff
fix(utils.gridintersect): bug in GridIntersect for vertex grids (#845)
dbrakenhoff Apr 6, 2020
e43dccc
feat(vtk): improve export at vertices (#844)
etiennebresciani Apr 6, 2020
0336b5c
feat(set all data external): set all data external for simulation (#846)
spaulins-usgs Apr 8, 2020
f514a22
fix(binaryfile_utils, CellbudgetFile): update for IMETH == 6 (#823)
jlarsen-usgs Apr 10, 2020
52ecd98
Fix(ModflowDis): zero based get_node() and get_lrc()… (#847)
jlarsen-usgs Apr 10, 2020
f6545ff
Fix(plot_array): update plot_array method to mask using np.ma.masked_…
jlarsen-usgs Apr 15, 2020
d96852f
adding multiple timeseries using ts.append_package() (#854)
OnnoEbbens Apr 17, 2020
0266728
New vtk export functionalities (#853)
etiennebresciani Apr 20, 2020
c45a5e5
fix(#856): Specifying period data with value None now only removes da…
spaulins-usgs Apr 22, 2020
f7554dd
ci(get_exes): update build_exes to get_exes to simplify initializatio…
jdhughes-usgs Apr 30, 2020
a177d59
fix(#831,#858): Data length check and case-insensitive lookup (#864)
spaulins-usgs May 1, 2020
4100de2
Fix(SfrFile): Update SfrFile for streambed elevation when present (#866)
jlarsen-usgs May 4, 2020
88fbd4c
feat(mfchd.py): prevent write chk-file always (#869)
rabbl May 8, 2020
265fc7c
fix(#867): fixed minimum record entry count for lists to never includ…
spaulins-usgs May 11, 2020
e3a6c26
fix: #868, #874, #879 (#881)
spaulins-usgs May 14, 2020
cbf1f65
Fix(#870): Update ims name file record after removing ims package (#880)
jlarsen-usgs May 14, 2020
29d7f84
Fix(CellBudgetFile): update for auto precision with imeth = 5 or 6 (#…
jlarsen-usgs May 14, 2020
f4e5ed3
fix(#886): MFArray aux variable now always returned as an numpy.ndarr…
spaulins-usgs May 19, 2020
bb861ac
fix(modelgrid): fix offset for xul and yul in read_usgs_model_referen…
jlarsen-usgs May 20, 2020
3cec792
Fix(MFSimulation): remove case sensitivity from register_ims_package(…
jlarsen-usgs May 25, 2020
b80a89c
fix(setup.py): read package name, version, etc. from version.py (#893)
jdhughes-usgs May 26, 2020
8e70c92
fix building in clean env (#894)
ritchie46 May 28, 2020
617b98d
fix(_plot_util3d_helper, export_array): (#895)
jlarsen-usgs Jun 1, 2020
0958b28
fix(mfsimulation): repair change for case insensitive model names (#897)
langevin-usgs Jun 1, 2020
7a31a1d
fix(Seawat.modelgrid): pass lenuni from dis file into modelgrid insta…
jlarsen-usgs Jun 2, 2020
04b74bd
feat(Mf6ListBudget): add support for mf6 budgets with multiple packag…
langevin-usgs Jun 2, 2020
3182f57
feat(str): add IRDFLG and IPTFLG control to STR (#905)
jdhughes-usgs Jun 9, 2020
f539d07
feat(ModflowSms): add support for simple, moderate, complex (#906)
langevin-usgs Jun 9, 2020
4fc61d5
feat(mbase): suppress duplicate package warning if verbose is False (…
jdhughes-usgs Jun 9, 2020
eed5afd
fix(SwtListBudget): totim was not being read correctly for SEAWAT lis…
langevin-usgs Jun 10, 2020
176c9b4
feat(GridIntersect): #902 (#903)
dbrakenhoff Jun 10, 2020
0652e4f
doc(swi2): fix docstring typos (#912)
jdhughes-usgs Jun 10, 2020
de38a5b
Introduce end-of-line normalization (#913)
jdhughes-usgs Jun 11, 2020
0207372
Fix faulty logic in ZoneBudget (#911)
jbellino-usgs Jun 22, 2020
bd335ca
refactor(make-release): Software citation developed from version.py (…
jdhughes-usgs Jun 22, 2020
686fa05
release: update mf6 v6.1.1 dfn and flopy mf6 classes
jdhughes-usgs Jun 22, 2020
e962e16
ci(get_exe): update get_exes repo for restored repo (#919)
jdhughes-usgs Jun 23, 2020
d5672f5
bug(GridIntersect): fixes #916 and #917 (#918)
dbrakenhoff Jun 23, 2020
796b7b1
fix(mfsfr2.check): negative segments for lakes no longer included in …
aleaf Jun 23, 2020
6dae1b0
fix(#280, #835): set_all_data_external now includes constants, cellid…
spaulins-usgs Jun 23, 2020
0ea97bd
release: add update-version_changes to generate version changes from …
jdhughes-usgs Jun 24, 2020
00af3c0
readme: update readme for v3.3.1 release (#924)
jdhughes-usgs Jun 24, 2020
c89b2d8
feat(ModflowAg): add the ModflowAg package for NWT (pull request #922)
jlarsen-usgs Jun 25, 2020
a0baca8
Merge remote-tracking branch 'origin/master' into develop
jdhughes-usgs Jun 26, 2020
b27fccd
fix(Modpath7Sim): fix TimePointInterval calculation for TimePointOpti…
jdhughes-usgs Jun 26, 2020
a2049e1
refactor(import flopy): remove message "flopy is installed in ..." (#…
mwtoews Jun 26, 2020
71734e7
release: update make-release and documentation to https (#928)
jdhughes-usgs Jun 26, 2020
27e4191
fix(idomain): data checks now treat all positive idomain values as ac…
spaulins-usgs Jun 29, 2020
f437e8b
fix(read binary file): fix for reading binary files with array data (…
spaulins-usgs Jun 30, 2020
d16411d
fix: restore Python 3.5 compatibility (ModuleNotFoundError -> ImportE…
mwtoews Jul 9, 2020
47572f0
fix(time series slowness): speeds up performance when a large number …
spaulins-usgs Jul 17, 2020
b6e2b30
refactor(matplotlib imports): wrap matplotlib imports in try/except (…
jdhughes-usgs Jul 27, 2020
3e7e367
fix(lgrutil): corrected bug in child to parent vertical exchanges (#948)
langevin-usgs Jul 27, 2020
3640b1a
fix(rcha and evta): irch and ievt arrays now zero based. fix for iss…
spaulins-usgs Jul 29, 2020
cd81a09
fix(check): get_active() error for confining bed layers (#937)
ougx Jul 29, 2020
49b4aa2
fix(mvr): added documentation explaining the difference between the t…
spaulins-usgs Jul 31, 2020
675d12b
ci(linting): Initial GitHub actions for linting (#954)
jdhughes-usgs Aug 5, 2020
fafb1f4
ci(actions): update GitHub actions workflow
jdhughes-usgs Aug 5, 2020
3befa07
CI(black): add info for running black prior to PR
jdhughes-usgs Aug 5, 2020
a6b6c57
fix(GridIntersect): fix crash intersecting 3D points that are outside…
mkennard-aquaveo Aug 6, 2020
98dd4be
doc(README): Update README.md badges
jdhughes-usgs Aug 6, 2020
c8cde4d
CI(actions): update GitHub workflow to run on cron
jdhughes-usgs Aug 6, 2020
2fd9326
fix(#958): fix GridIntersect._vtx_grid_to_shape_generator rtree for c…
mkennard-aquaveo Aug 7, 2020
05ce3bc
refactor(mfdatutil): update collections deprecated import (#960)
jdhughes-usgs Aug 7, 2020
510b9f1
refactor(gridgen): fixes and additions related to vertical pass throu…
cnicol-gwlogic Aug 10, 2020
9ac7675
ci(GitHub): Update GitHub actions workflow
jdhughes-usgs Aug 10, 2020
135fb0a
ci(actions): Update github actions
jdhughes-usgs Aug 10, 2020
1f98cf4
ci(update): update GitHub action workflow file
jdhughes-usgs Aug 10, 2020
297ef50
ci(update): update GitHub action workflow file
jdhughes-usgs Aug 10, 2020
0b368cc
ci(update): update GitHub action workflow file
jdhughes-usgs Aug 11, 2020
573da13
fix(mfsfr2.py:find_path): wrap find_path() so that the routing dictio…
aleaf Aug 11, 2020
af28ed8
fix(internal): Flopy fixed to correctly reads in internal keyword whe…
spaulins-usgs Aug 13, 2020
49995a4
refactor(dependencies): Refactor collections and matplotlib imports (…
jdhughes-usgs Aug 17, 2020
992d788
update(mfsfr2, mfuzf1): change default optionblock behavior to block …
jlarsen-usgs Aug 17, 2020
46e041b
feat(set_all_data_external) : new check_data option (#966)
spaulins-usgs Aug 17, 2020
7bdc399
perf(util_array.util2d): write_txt string += performance slow for lar…
cnicol-gwlogic Aug 18, 2020
675f4b3
ci(pymake): update pymake import (#969)
jdhughes-usgs Aug 22, 2020
d9e1d6c
ci(rtd): setup readthedocs based on existing ghpages files (#970)
jdhughes-usgs Aug 22, 2020
dcd7e51
readme: update with readthedocs information
jdhughes-usgs Aug 22, 2020
5aeda84
ci(rtd): add flopy version to readthedocs
jdhughes-usgs Aug 22, 2020
1ee2b73
ci(actions): reorder GitHub actions matrix order (#971)
jdhughes-usgs Aug 22, 2020
b46cf17
doc(rtd): rearrange Flopy Code section (#972)
jdhughes-usgs Aug 23, 2020
cab9f63
ci(t035): Do not run t035 on macOS or Win32 (#973)
jdhughes-usgs Aug 25, 2020
cb6b98c
refactor(flopy): run black formatting with latest (20.8b1) (#975)
jdhughes-usgs Aug 27, 2020
2763a1d
feat(cellid not as tuple): list data input now accepts cellids as sep…
spaulins-usgs Aug 27, 2020
893bd11
ci(rtd): generate tutorial files and save as action asset (#979)
jdhughes-usgs Aug 29, 2020
ebb7a8f
ci(rtd): make separate rtd workflow (#980)
jdhughes-usgs Aug 29, 2020
24de293
ci(update): update miniconda action (#981)
jdhughes-usgs Aug 29, 2020
7bec3ec
ci(rtd): modify rtd workflow (#982)
jdhughes-usgs Aug 29, 2020
c7a678e
ci(rtd): modify conf.py (#983)
jdhughes-usgs Aug 29, 2020
483bcc8
refactor(load): refactor load methods to use @classmethod (#985)
jdhughes-usgs Aug 31, 2020
fbee3c0
refactor(load): refactor load methods to use @classmethod (#988)
jdhughes-usgs Aug 31, 2020
bcb68a6
refactor(Modpath): refactor Modpath to Modpath6 (#987)
jdhughes-usgs Sep 1, 2020
9983191
refactor(rtd): refactor functions to hide private functions (#989)
jdhughes-usgs Sep 3, 2020
44d8b5b
fix(extraneous blocks and zero length data in a list) (#990)
spaulins-usgs Sep 3, 2020
0e380bc
update(mfag): update _read_block_21_25_or_29 for gsflow file conventi…
jlarsen-usgs Sep 23, 2020
5091182
fix(gridintersect): use linestrings and structured grid (#996)
tomvansteijn Sep 25, 2020
fdcc35f
feat(cvfdutil): capability to create disv nested grids (#997)
langevin-usgs Oct 2, 2020
37bab17
refactor(shapefile): add check_version for pyshp>=2; skip tests (#1001)
mwtoews Oct 15, 2020
698b4ec
refactor(pyproj): for versions before 2.2.0, prepend "+init=" to epsg…
mwtoews Oct 19, 2020
9ad6732
feat(geospatial_util): geospatial consolidation utilities (#1002)
jlarsen-usgs Oct 19, 2020
8f3dbec
refactor(numpy): patch modern flip function for versions older than 1…
mwtoews Oct 20, 2020
0bc91e4
feat(mf6): Add MODFLOW 6 GWT dfn and classes (#1006)
jdhughes-usgs Oct 21, 2020
133f07f
feat(mf6): Update t503 autotest to use mf6examples zip file (#1007)
jdhughes-usgs Oct 21, 2020
9d79e3b
release: update release scripts and instructions (#1008)
jdhughes-usgs Oct 21, 2020
013af73
ci(t503): update t503 autotest (#1009)
jdhughes-usgs Oct 26, 2020
fedddb8
release(3.3.2)
jdhughes-usgs Oct 26, 2020
3cd72d4
release(3.3.2)
jdhughes-usgs Oct 26, 2020
8546840
release(3.3.2)
jdhughes-usgs Oct 26, 2020
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20 changes: 20 additions & 0 deletions .docs/Makefile
Original file line number Diff line number Diff line change
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# Minimal makefile for Sphinx documentation
#

# You can set these variables from the command line, and also
# from the environment for the first two.
SPHINXOPTS ?=
SPHINXBUILD ?= sphinx-build
SOURCEDIR = .
BUILDDIR = _build

# Put it first so that "make" without argument is like "make help".
help:
@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

.PHONY: help Makefile

# Catch-all target: route all unknown targets to Sphinx using the new
# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS).
%: Makefile
@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
Binary file added .docs/_images/flopylogo.png
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201 changes: 201 additions & 0 deletions .docs/code.rst
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Flopy Code
==========

MODFLOW 6
---------

MODFLOW 6 Base Packages
^^^^^^^^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:glob:
:maxdepth: 4

./source/flopy.mf6.mf*


MODFLOW 6 Simulation Packages
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:maxdepth: 4

./source/flopy.mf6.modflow.mfgnc
./source/flopy.mf6.modflow.mfims
./source/flopy.mf6.modflow.mfmvr
./source/flopy.mf6.modflow.mfnam
./source/flopy.mf6.modflow.mftdis


MODFLOW 6 Groundwater Flow Packages
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:glob:
:maxdepth: 4

./source/flopy.mf6.modflow.mfgwf*


MODFLOW 6 Groundwater Transport Packages
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:glob:
:maxdepth: 4

./source/flopy.mf6.modflow.mfgwt*


MODFLOW 6 Utilities
^^^^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:glob:
:maxdepth: 4

./source/flopy.mf6.modflow.mfutl*


Previous Versions of MODFLOW
----------------------------

MODFLOW Base Classes
^^^^^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:maxdepth: 4

./source/flopy.mbase
./source/flopy.pakbase


MODFLOW Packages
^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:glob:
:maxdepth: 4

./source/flopy.modflow.mf*


MT3DMS Packages
^^^^^^^^^^^^^^^

Contents:

.. toctree::
:glob:
:maxdepth: 4

./source/flopy.mt3d.mt*


SEAWAT Packages
^^^^^^^^^^^^^^^

Contents:

.. toctree::
:glob:
:maxdepth: 4

./source/flopy.seawat.swt*


MODPATH 7 Packages
^^^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:glob:
:maxdepth: 4

./source/flopy.modpath.mp7*


MODPATH 6 Packages
^^^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:glob:
:maxdepth: 4

./source/flopy.modpath.mp6*


Flopy Utilities
---------------

Model Utilities (including binary file readers)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Contents:

.. toctree::
:glob:
:maxdepth: 4

./source/flopy.utils.*


Plotting Utilities
^^^^^^^^^^^^^^^^^^
Contents:

.. toctree::
:glob:
:maxdepth: 4

./source/flopy.plot.*


Export Utilities
^^^^^^^^^^^^^^^^
Contents:

.. toctree::
:glob:
:maxdepth: 4

./source/flopy.export.*


PEST Utilities
^^^^^^^^^^^^^^
Contents:

.. toctree::
:glob:
:maxdepth: 4

./source/flopy.pest.*


Discretization Utilities
^^^^^^^^^^^^^^^^^^^^^^^^
Contents:

.. toctree::
:glob:
:maxdepth: 4

./source/flopy.discretization.*
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