Merge remote-tracking branch 'origin/master' into mmore500-reproducib…

…le-output

.github/workflows/CI.yml

@@ -8,7 +8,7 @@ jobs:
   build:
     strategy:
       matrix:
-        python-version: [3.7, 3.8, 3.9, "3.10", 3.11]
+        python-version: [3.8, 3.9, "3.10", 3.11, 3.12]
         os: [ubuntu-latest, windows-latest, macos-latest]
       fail-fast: false
 

requirements/requirements_dev-py310.txt

@@ -1,194 +1,222 @@
-#
-# This file is autogenerated by pip-compile with python 3.10
-# To update, run:
-#
-#    pip-compile --output-file=requirements_dev-py310.txt requirements_dev.in
-#
-alabaster==0.7.13
+# This file was autogenerated by uv via the following command:
+#    uv pip compile requirements_dev.in -o requirements_dev-py310.txt
+alabaster==0.7.16
     # via sphinx
-argh==0.28.1
-    # via watchdog
-attrs==22.2.0
+attrs==24.2.0
     # via pytest
-babel==2.12.1
+babel==2.16.0
     # via sphinx
-bleach==6.0.0
-    # via readme-renderer
+backports-tarfile==1.2.0
+    # via jaraco-context
 bump2version==0.5.11
     # via -r requirements_dev.in
-certifi==2022.12.7
+cachetools==5.5.0
+    # via tox
+certifi==2024.8.30
     # via requests
-charset-normalizer==3.1.0
+cffi==1.17.1
+    # via cryptography
+chardet==5.2.0
+    # via tox
+charset-normalizer==3.4.0
     # via requests
-click==8.1.3
+click==8.1.7
     # via keyname
-contourpy==1.2.0
+colorama==0.4.6
+    # via tox
+contourpy==1.3.0
     # via matplotlib
-coverage==4.5.4
+coverage==7.6.2
     # via -r requirements_dev.in
-cycler==0.11.0
+cryptography==43.0.1
+    # via secretstorage
+cycler==0.12.1
     # via matplotlib
 decorator==5.1.1
     # via retry
-distlib==0.3.6
+distlib==0.3.9
     # via virtualenv
 distutils-strtobool==0.1.0
     # via -r requirements_dev.in
-docutils==0.19
+docutils==0.21.2
     # via
     #   readme-renderer
     #   sphinx
-entrypoints==0.3
-    # via flake8
-exceptiongroup==1.1.0
+exceptiongroup==1.2.2
     # via pytest
-filelock==3.4.1
+filelock==3.16.1
     # via
     #   -r requirements_dev.in
     #   tox
     #   virtualenv
-flake8==3.7.8
+flake8==7.1.1
     # via -r requirements_dev.in
-fonttools==4.47.0
+fonttools==4.54.1
     # via matplotlib
-idna==3.4
+idna==3.10
     # via requests
 imagesize==1.4.1
     # via sphinx
-importlib-metadata==4.8.3
-    # via -r requirements_dev.in
+importlib-metadata==8.5.0
+    # via
+    #   -r requirements_dev.in
+    #   keyring
+    #   twine
 iniconfig==2.0.0
     # via pytest
-jinja2==3.1.2
+jaraco-classes==3.4.0
+    # via keyring
+jaraco-context==6.0.1
+    # via keyring
+jaraco-functools==4.1.0
+    # via keyring
+jeepney==0.8.0
+    # via
+    #   keyring
+    #   secretstorage
+jinja2==3.1.4
     # via sphinx
 keyname==0.6.0
     # via -r requirements_dev.in
-kiwisolver==1.4.4
+keyring==25.4.1
+    # via twine
+kiwisolver==1.4.7
     # via matplotlib
-markupsafe==2.0.1
+markdown-it-py==3.0.0
+    # via rich
+markupsafe==3.0.1
     # via
     #   -r requirements_dev.in
     #   jinja2
-matplotlib==3.8.2
+matplotlib==3.9.2
     # via
     #   -r requirements_dev.in
     #   seaborn
-mccabe==0.6.1
+mccabe==0.7.0
     # via flake8
-more-itertools==9.1.0
-    # via keyname
-numpy==1.24.2
+mdurl==0.1.2
+    # via markdown-it-py
+more-itertools==10.5.0
+    # via
+    #   jaraco-classes
+    #   jaraco-functools
+    #   keyname
+nh3==0.2.18
+    # via readme-renderer
+numpy==2.1.2
     # via
     #   contourpy
     #   matplotlib
     #   pandas
-    #   scipy
     #   seaborn
-packaging==23.0
+packaging==24.1
     # via
     #   matplotlib
+    #   pyproject-api
     #   pytest
     #   sphinx
     #   tox
-pandas==1.5.3
+pandas==2.2.3
     # via seaborn
-pathtools==0.1.2
-    # via watchdog
-pillow==9.4.0
+pillow==10.4.0
     # via matplotlib
-pkginfo==1.9.6
+pkginfo==1.10.0
     # via twine
-platformdirs==2.4.0
+platformdirs==4.3.6
     # via
     #   -r requirements_dev.in
+    #   tox
     #   virtualenv
-pluggy==0.13.1
+pluggy==1.5.0
     # via
     #   pytest
     #   tox
 py==1.11.0
-    # via
-    #   retry
-    #   tox
-pycodestyle==2.5.0
+    # via retry
+pycodestyle==2.12.1
     # via flake8
-pyflakes==2.1.1
+pycparser==2.22
+    # via cffi
+pyflakes==3.2.0
     # via flake8
-pygments==2.14.0
+pygments==2.18.0
     # via
     #   readme-renderer
+    #   rich
     #   sphinx
-pyparsing==3.0.9
+pyparsing==3.2.0
     # via matplotlib
+pyproject-api==1.8.0
+    # via tox
 pytest==7.2.2
     # via -r requirements_dev.in
-python-dateutil==2.8.2
+python-dateutil==2.9.0.post0
     # via
     #   matplotlib
     #   pandas
-python-slugify==4.0.1
+python-slugify==8.0.4
     # via -r requirements_dev.in
-pytz==2022.7.1
+pytz==2024.2
     # via pandas
-pyyaml==6.0
-    # via watchdog
-readme-renderer==37.3
+readme-renderer==44.0
     # via twine
-requests==2.28.2
+requests==2.32.3
     # via
     #   requests-toolbelt
     #   sphinx
     #   twine
-requests-toolbelt==0.10.1
+requests-toolbelt==1.0.0
     # via twine
 retry==0.9.2
     # via keyname
-scipy==1.10.1
-    # via seaborn
-seaborn==0.11.2
+rfc3986==2.0.0
+    # via twine
+rich==13.9.0
+    # via twine
+seaborn==0.13.2
     # via -r requirements_dev.in
+secretstorage==3.3.3
+    # via keyring
+setuptools==75.1.0
+    # via sphinx
 six==1.16.0
     # via
-    #   bleach
     #   python-dateutil
     #   sphinx
-    #   tox
 snowballstemmer==2.2.0
     # via sphinx
 sphinx==1.8.5
     # via -r requirements_dev.in
-sphinxcontrib-serializinghtml==1.1.5
+sphinxcontrib-serializinghtml==2.0.0
     # via sphinxcontrib-websupport
 sphinxcontrib-websupport==1.2.4
     # via sphinx
 text-unidecode==1.3
     # via python-slugify
-tomli==2.0.1
+tomli==2.0.2
     # via
+    #   pyproject-api
     #   pytest
     #   tox
-tox==3.26.0
+tox==4.20.0
     # via -r requirements_dev.in
-tqdm==4.65.0
-    # via twine
-twine==1.14.0
+twine==5.1.1
     # via -r requirements_dev.in
 typing-extensions==3.10.0.2
     # via -r requirements_dev.in
-urllib3==1.26.15
-    # via requests
-virtualenv==20.20.0
+tzdata==2024.2
+    # via pandas
+urllib3==2.2.3
+    # via
+    #   requests
+    #   twine
+virtualenv==20.26.6
     # via tox
-watchdog==0.9.0
+watchdog==5.0.3
     # via -r requirements_dev.in
-webencodings==0.5.1
-    # via bleach
-wheel==0.33.6
+wheel==0.44.0
     # via -r requirements_dev.in
-zipp==3.6.0
+zipp==3.20.2
     # via
     #   -r requirements_dev.in
     #   importlib-metadata
-
-# The following packages are considered to be unsafe in a requirements file:
-# setuptools