Update pybind and json to the latest (#23589)

### Description
Update pybind and json to the latest. 

### Motivation and Context
Resolve #23512

cmake/deps.txt

@@ -30,7 +30,7 @@ google_benchmark;https://github.com/google/benchmark/archive/refs/tags/v1.8.5.zi
 googletest;https://github.com/google/googletest/archive/refs/tags/v1.15.0.zip;9d2d0af8d77ac726ea55d44a8fa727ec98311349
 #xnnpack 2024.09.04
 googlexnnpack;https://github.com/google/XNNPACK/archive/fe98e0b93565382648129271381c14d6205255e3.zip;14f61dcf17cec2cde34ba2dcf61d6f24bf6059f3
-json;https://github.com/nlohmann/json/archive/refs/tags/v3.10.5.zip;f257f8dc27c5b8c085dc887b40cddd18ae1f725c
+json;https://github.com/nlohmann/json/archive/refs/tags/v3.11.3.zip;5e88795165cc8590138d1f47ce94ee567b85b4d6
 microsoft_gsl;https://github.com/microsoft/GSL/archive/refs/tags/v4.0.0.zip;cf368104cd22a87b4dd0c80228919bb2df3e2a14
 microsoft_wil;https://github.com/microsoft/wil/archive/refs/tags/v1.0.230629.1.zip;e4a542a323c070376f7c2d1973d0f7ddbc1d2fa5
 mimalloc;https://github.com/microsoft/mimalloc/archive/refs/tags/v2.1.1.zip;d5ee7d34223d0567892db5179849939c8769dc41
@@ -47,14 +47,14 @@ protoc_linux_aarch64;https://github.com/protocolbuffers/protobuf/releases/downlo
 protoc_mac_universal;https://github.com/protocolbuffers/protobuf/releases/download/v21.12/protoc-21.12-osx-universal_binary.zip;23710c3d1c2036d8d65a6a22234372fa2d7af9ef
 psimd;https://github.com/Maratyszcza/psimd/archive/072586a71b55b7f8c584153d223e95687148a900.zip;1f5454b01f06f9656b77e4a5e2e31d7422487013
 pthreadpool;https://github.com/google/pthreadpool/archive/4e80ca24521aa0fb3a746f9ea9c3eaa20e9afbb0.zip;bd4ea65c8292801e9555b527a0ecbb2e0092c917
-pybind11;https://github.com/pybind/pybind11/archive/refs/tags/v2.13.1.zip;9255d5c8568debcc329dd42ed8f410ee139ac7b1
+pybind11;https://github.com/pybind/pybind11/archive/refs/tags/v2.13.6.zip;f780292da9db273c8ef06ccf5fd4b623624143e9
 pytorch_cpuinfo;https://github.com/pytorch/cpuinfo/archive/8a1772a0c5c447df2d18edf33ec4603a8c9c04a6.zip;85bf8a60dae026b99b6ccd78606c85ed83bfb2cd
 re2;https://github.com/google/re2/archive/refs/tags/2024-07-02.zip;646e1728269cde7fcef990bf4a8e87b047882e88
 safeint;https://github.com/dcleblanc/SafeInt/archive/refs/tags/3.0.28.zip;23f252040ff6cb9f1fd18575b32fa8fb5928daac
 tensorboard;https://github.com/tensorflow/tensorboard/archive/373eb09e4c5d2b3cc2493f0949dc4be6b6a45e81.zip;67b833913605a4f3f499894ab11528a702c2b381
 cutlass;https://github.com/NVIDIA/cutlass/archive/refs/tags/v3.5.1.zip;e49b2b964163d27765a5002d210a2f3c73771835
 utf8_range;https://github.com/protocolbuffers/utf8_range/archive/72c943dea2b9240cd09efde15191e144bc7c7d38.zip;9925739c9debc0efa2adcb194d371a35b6a03156
-extensions;https://github.com/microsoft/onnxruntime-extensions/archive/f3f6caa6e8adb420e005ec41c6fefc8d75affb6e.zip;cec2e164f1a00e7d80fd94df65e4e8d2daead70d
+extensions;https://github.com/microsoft/onnxruntime-extensions/archive/c24b7bab0c12f53da76d0c31b03b9f0f8ec8f3b4.zip;239063aee4946a9af147b473a4c3da78ba7413b4
 composable_kernel;https://github.com/ROCmSoftwarePlatform/composable_kernel/archive/204da9c522cebec5220bba52cd3542ebcaf99e7a.zip;1827348efd47831c13074245274d41b7cae8a557
 directx_headers;https://github.com/microsoft/DirectX-Headers/archive/refs/tags/v1.613.1.zip;47653509a3371eabb156360f42faf582f314bf2e
 cudnn_frontend;https://github.com/NVIDIA/cudnn-frontend/archive/refs/tags/v1.7.0.zip;d0753d8d5b39947ca0729d7773cb84653a129eb1