RBPBench v1.0.2

• Extended statistics (plots and tables) in search and batch modes
• Updated README

RBPBench v1.0.1

• Various small improvements
• Used to generate examples in readme

RBPBench v1.0

• New program modes: enmo, nemo, tomtom, streme, goa
• enmo and nemo to check for individual motif enrichment
• tomtom to search for similar database motifs (given motif(s) or regex)
• GO term enrichment analysis options in different modes
• Optionally select individual motifs or RBPs based on known functions
• Various smaller additions (functions, helper scripts, parameters, plots)

RBPBench v0.9

• New program modes: searchseq, searchregex, searchlong, searchrna, searchlongrna
• Extended HTML reports, including one for rbpbench batch
• Added option to search for regular expression (regex) motifs in addition to RBP motifs
• Various smaller additions

RBPBench v0.8.1

• Small bugfix in HTML report

RBPBench v0.8

• Changed HTML report output orders (compare and search)
• Added options to disable MEME version check / handle different MEME versions

RBPBench v0.7

• Added Galaxy tool wrapper script

RBPBench v0.6

• Bugfix in MPT selection

RBPBench v0.5

• Improved table sort, also allow scientific notation sort
• During most prominent transcript selection: Prioritize basic tag transcripts even if TSL is worse or NA
• Disable additional plotting if no motif hits + some more checks
• Changed median to float

RBPBench v0.4

• Added several options to make HTML report work with Galaxy (e.g. optional plotly html embeddings, sorting code integration)
• Improved plot descriptions