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[doc] some entries to changelog for 2.2
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marscher committed May 17, 2016
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6 changes: 4 additions & 2 deletions doc/source/CHANGELOG.rst
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Changelog
=========

2.2 ()
----------------
2.2 (5-17-16)
-------------

**New features**:

- thermo: added TRAM estimation.
- thermo: added plotting feature for implied timescales.
- thermo: added Jupyter notebook examples: :ref:`ref-notebooks`.
- thermo: show convergence progress during estimation.

**Fixes**:
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15 changes: 8 additions & 7 deletions doc/source/ipython.rst
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=================
IPython Tutorials
=================
.. _ref-notebooks:

These IPython (http://ipython.org) notebooks show the usage of the PyEMMA API in
=====================================
Jupyter (IPython) notebooks Tutorials
=====================================

These Jupyter (http://jupyter.org) notebooks show the usage of the PyEMMA API in
action and also describe the workflow of Markov model building.

You can obtain a copy of all notebooks and most of the used data
You can download a copy of all notebooks and most of the used data
`here <https://github.com/markovmodel/PyEMMA_IPython/archive/devel.zip>`_.
Note that the trajectory of the D.E. Shaw BPTI simulation trajectory is not included
in this archive, since we're not permitted to share this data. Thus the corresponding
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generated/model_selection_validation
generated/tpt


Multi-Ensemble Markov state models
----------------------------------

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:maxdepth: 1

generated/doublewell
generated/alanine
generated/alanine

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