Fix showup and update documentation

lmickes · Jun 4, 2023 · 13d2e7f · 13d2e7f
1 parent 16c0782
commit 13d2e7f
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Showing 29 changed files with 399 additions and 339 deletions.
diff --git a/data/tutorial/manual.ipynb b/data/tutorial/manual.ipynb
@@ -10,7 +10,7 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "pyWitness v1.0 : Authorship - https://lmickes.github.io/pyWitness/authorship.html\n",
+      "pyWitness v1.1 : Authorship - https://lmickes.github.io/pyWitness/authorship.html\n",
       "pyWitness      : Runtime warnings are suppressed\n",
       "pyWitness      : to reinstate (import warnings; warnings.simplefilter(\"\") \n"
      ]
@@ -1618,7 +1618,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 36,
+   "execution_count": 3,
    "id": "e8996c61-ae57-47cf-ae74-064129279330",
    "metadata": {},
    "outputs": [
@@ -1842,7 +1842,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 40,
+   "execution_count": 4,
    "id": "0a4ea1ad-cf82-4206-8ee3-2b00d8276f31",
    "metadata": {},
    "outputs": [
@@ -1859,18 +1859,18 @@
       "DataRaw.checkData> confidence    : [1 2 3 4 5 6 7]\n",
       "DataRaw.checkData> number trials : 780\n",
       "DataProcessed.comparePAUC> pAUC1   : 0.0259 +/- 0.003\n",
-      "DataProcessed.comparePAUC> pAUC2   : 0.031 +/- 0.0031\n",
-      "DataProcessed.comparePAUC> Z, p    : 1.1833 0.2367\n",
-      "DataProcessed.comparePAUC> pooled sd 0.00432588239041744\n"
+      "DataProcessed.comparePAUC> pAUC2   : 0.031 +/- 0.0034\n",
+      "DataProcessed.comparePAUC> Z, p    : 1.1158 0.2645\n",
+      "DataProcessed.comparePAUC> pooled sd 0.0045878106976578546\n"
      ]
     },
     {
      "data": {
       "text/plain": [
-       "[1.1833492845532336, 0.23667074791131681]"
+       "[1.1157892443939004, 0.2645123587843563]"
       ]
      },
-     "execution_count": 40,
+     "execution_count": 4,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -18681,7 +18681,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.8"
+   "version": "3.11.3"
   }
  },
  "nbformat": 4,

diff --git a/docs/_static/basic.css b/docs/_static/basic.css
@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- basic theme.
  *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -324,13 +324,15 @@ aside.sidebar {
 p.sidebar-title {
     font-weight: bold;
 }
+
 nav.contents,
 aside.topic,
 div.admonition, div.topic, blockquote {
     clear: left;
 }
 
 /* -- topics ---------------------------------------------------------------- */
+
 nav.contents,
 aside.topic,
 div.topic {
@@ -606,6 +608,7 @@ ol.simple p,
 ul.simple p {
     margin-bottom: 0;
 }
+
 aside.footnote > span,
 div.citation > span {
     float: left;

diff --git a/docs/_static/css/badge_only.css b/docs/_static/css/badge_only.css
diff --git a/docs/_static/css/theme.css b/docs/_static/css/theme.css
diff --git a/docs/_static/doctools.js b/docs/_static/doctools.js
@@ -4,7 +4,7 @@
  *
  * Base JavaScript utilities for all Sphinx HTML documentation.
  *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */

diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '1.1',
+    VERSION: '1.3',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/docs/_static/graphviz.css b/docs/_static/graphviz.css
@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- graphviz extension.
  *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */

diff --git a/docs/_static/language_data.js b/docs/_static/language_data.js
@@ -5,7 +5,7 @@
  * This script contains the language-specific data used by searchtools.js,
  * namely the list of stopwords, stemmer, scorer and splitter.
  *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */

diff --git a/docs/_static/searchtools.js b/docs/_static/searchtools.js
@@ -4,7 +4,7 @@
  *
  * Sphinx JavaScript utilities for the full-text search.
  *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */

diff --git a/docs/authorship.html b/docs/authorship.html
@@ -1,10 +1,10 @@
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" >
 <head>
-  <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
+  <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Authorship &mdash; pyWitness 1.1 documentation</title>
+  <title>Authorship &mdash; pyWitness 1.3 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="_static/graphviz.css" type="text/css" />
@@ -15,10 +15,9 @@
     <script src="_static/js/html5shiv.min.js"></script>
   <![endif]-->
 
-        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
         <script src="_static/jquery.js"></script>
-        <script src="_static/underscore.js"></script>
         <script src="_static/_sphinx_javascript_frameworks_compat.js"></script>
+        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
         <script src="_static/doctools.js"></script>
         <script src="_static/sphinx_highlight.js"></script>
         <script src="_static/code-tabs.js"></script>
@@ -34,15 +33,19 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> pyWitness
-            <img src="_static/pyWitnessLogo200.jpg" class="logo" alt="Logo"/>
+
+
+
+          <a href="index.html" class="icon icon-home">
+            pyWitness
+              <img src="_static/pyWitnessLogo200.jpg" class="logo" alt="Logo"/>
           </a>
               <div class="version">
-                1.1
+                1.3
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
-    <input type="text" name="q" placeholder="Search docs" />
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
     <input type="hidden" name="check_keywords" value="yes" />
     <input type="hidden" name="area" value="default" />
   </form>
@@ -80,7 +83,7 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="index.html" class="icon icon-home"></a></li>
+      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
       <li class="breadcrumb-item active">Authorship</li>
       <li class="wy-breadcrumbs-aside">
             <a href="_sources/authorship.rst.txt" rel="nofollow"> View page source</a>
@@ -131,7 +134,7 @@ <h2>Contacting us<a class="headerlink" href="#contacting-us" title="Permalink to
 
   <div role="contentinfo">
     <p>&#169; Copyright Royal Holloway, University of London 2020 and University of Bristol 2020.
-      <span class="lastupdated">Last updated on Dec 18, 2022.
+      <span class="lastupdated">Last updated on Jun 04, 2023.
       </span></p>
   </div>
 

diff --git a/docs/genindex.html b/docs/genindex.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Index &mdash; pyWitness 1.1 documentation</title>
+  <title>Index &mdash; pyWitness 1.3 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="_static/graphviz.css" type="text/css" />
@@ -14,10 +14,9 @@
     <script src="_static/js/html5shiv.min.js"></script>
   <![endif]-->
 
-        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
         <script src="_static/jquery.js"></script>
-        <script src="_static/underscore.js"></script>
         <script src="_static/_sphinx_javascript_frameworks_compat.js"></script>
+        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
         <script src="_static/doctools.js"></script>
         <script src="_static/sphinx_highlight.js"></script>
         <script src="_static/tabs.js"></script>
@@ -32,15 +31,19 @@
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search" >
-            <a href="index.html" class="icon icon-home"> pyWitness
-            <img src="_static/pyWitnessLogo200.jpg" class="logo" alt="Logo"/>
+
+
+
+          <a href="index.html" class="icon icon-home">
+            pyWitness
+              <img src="_static/pyWitnessLogo200.jpg" class="logo" alt="Logo"/>
           </a>
               <div class="version">
-                1.1
+                1.3
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
-    <input type="text" name="q" placeholder="Search docs" />
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
     <input type="hidden" name="check_keywords" value="yes" />
     <input type="hidden" name="area" value="default" />
   </form>
@@ -73,8 +76,8 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="index.html" class="icon icon-home"></a> &raquo;</li>
-      <li>Index</li>
+      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Index</li>
       <li class="wy-breadcrumbs-aside">
       </li>
   </ul>
@@ -193,8 +196,12 @@ <h2 id="F">F</h2>
 <h2 id="I">I</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="moduledocs.html#pyWitness.DataRaw.isDesignateId">isDesignateId() (pyWitness.DataRaw method)</a>
+      <li><a href="moduledocs.html#pyWitness.DataProcessed.isDesignateId">isDesignateId() (pyWitness.DataProcessed method)</a>
+
+      <ul>
+        <li><a href="moduledocs.html#pyWitness.DataRaw.isDesignateId">(pyWitness.DataRaw method)</a>
 </li>
+      </ul></li>
   </ul></td>
 </tr></table>
 
@@ -338,7 +345,7 @@ <h2 id="W">W</h2>
 
   <div role="contentinfo">
     <p>&#169; Copyright Royal Holloway, University of London 2020 and University of Bristol 2020.
-      <span class="lastupdated">Last updated on Jan 29, 2023.
+      <span class="lastupdated">Last updated on Jun 04, 2023.
       </span></p>
   </div>