Merge pull request NCAR#62 from climbfuji/update_gsd_develop_from_mas…

…ter_20201118 Update gsd/develop from master 2020/11/18
llpcarson · Nov 20, 2020 · 7fa0ec8 · 7fa0ec8
2 parents c3bb4d0 + 551be29
commit 7fa0ec8
Show file tree

Hide file tree

Showing 193 changed files with 24,406 additions and 9,073 deletions.
diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -163,28 +163,6 @@ if (${CMAKE_Fortran_COMPILER_ID} STREQUAL "GNU")
 elseif (${CMAKE_Fortran_COMPILER_ID} STREQUAL "Intel")
   # Adjust settings for bit-for-bit reproducibility of NEMSfv3gfs
   if (PROJECT STREQUAL "CCPP-FV3")
-    SET_SOURCE_FILES_PROPERTIES(${CMAKE_CURRENT_SOURCE_DIR}/physics/module_bfmicrophysics.f
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/sflx.f
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/sfc_diff.f
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/sfc_diag.f
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/module_nst_model.f90
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/calpreciptype.f90
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/mersenne_twister.f
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/module_nst_water_prop.f90
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/aer_cloud.F
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/wv_saturation.F
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/cldwat2m_micro.F
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/surface_perturbation.F90
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/radiation_aerosols.f
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/cu_gf_deep.F90
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/cu_gf_sh.F90
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/module_bl_mynn.F90
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/module_MYNNPBL_wrapper.F90
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/module_MYNNSFC_wrapper.F90
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/module_mp_thompson_make_number_concentrations.F90
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/module_SF_JSFC.F90
-                                ${CMAKE_CURRENT_SOURCE_DIR}/physics/module_BL_MYJPBL.F90
-                                PROPERTIES COMPILE_FLAGS "-r8 -ftz")
 
     if (${CMAKE_CURRENT_SOURCE_DIR}/physics/module_sf_mynn.F90 IN_LIST SCHEMES)
       # Reduce optimization for module_sf_mynn.F90 (to avoid an apparent compiler bug with Intel 18 on Hera)

diff --git a/physics/GFS_DCNV_generic.meta b/physics/GFS_DCNV_generic.meta
@@ -59,7 +59,7 @@
   standard_name = x_wind_updated_by_physics
   long_name = zonal wind updated by physics
   units = m s-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = in
@@ -68,7 +68,7 @@
   standard_name = y_wind_updated_by_physics
   long_name = meridional wind updated by physics
   units = m s-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = in
@@ -77,7 +77,7 @@
   standard_name = air_temperature_updated_by_physics
   long_name = temperature updated by physics
   units = K
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = in
@@ -86,7 +86,7 @@
   standard_name = water_vapor_specific_humidity_updated_by_physics
   long_name = water vapor specific humidity updated by physics
   units = kg kg-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
@@ -95,7 +95,7 @@
   standard_name = x_wind_save
   long_name = x-wind before entering a physics scheme
   units = m s-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
@@ -104,7 +104,7 @@
   standard_name = y_wind_save
   long_name = y-wind before entering a physics scheme
   units = m s-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
@@ -113,7 +113,7 @@
   standard_name = air_temperature_save
   long_name = air temperature before entering a physics scheme
   units = K
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
@@ -122,7 +122,7 @@
   standard_name = water_vapor_specific_humidity_save
   long_name = water vapor specific humidity before entering a physics scheme
   units = kg kg-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
@@ -131,7 +131,7 @@
   standard_name = instantaneous_water_vapor_specific_humidity_tendency_due_to_convection
   long_name = instantaneous moisture tendency due to convection
   units = kg kg-1 s-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
@@ -233,7 +233,7 @@
   standard_name = lwe_thickness_of_deep_convective_precipitation_amount
   long_name = deep convective rainfall amount on physics timestep
   units = m
-  dimensions = (horizontal_dimension)
+  dimensions = (horizontal_loop_extent)
   type = real
   kind = kind_phys
   intent = in
@@ -251,7 +251,7 @@
   standard_name = cloud_work_function
   long_name = cloud work function
   units = m2 s-2
-  dimensions = (horizontal_dimension)
+  dimensions = (horizontal_loop_extent)
   type = real
   kind = kind_phys
   intent = in
@@ -260,7 +260,7 @@
   standard_name = x_wind_save
   long_name = x-wind before entering a physics scheme
   units = m s-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = in
@@ -269,7 +269,7 @@
   standard_name = y_wind_save
   long_name = y-wind before entering a physics scheme
   units = m s-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = in
@@ -278,7 +278,7 @@
   standard_name = air_temperature_save
   long_name = air temperature before entering a physics scheme
   units = K
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = in
@@ -287,7 +287,7 @@
   standard_name = water_vapor_specific_humidity_save
   long_name = water vapor specific humidity before entering a physics scheme
   units = kg kg-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = in
@@ -296,7 +296,7 @@
   standard_name = x_wind_updated_by_physics
   long_name = zonal wind updated by physics
   units = m s-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = in
@@ -305,7 +305,7 @@
   standard_name = y_wind_updated_by_physics
   long_name = meridional wind updated by physics
   units = m s-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = in
@@ -314,7 +314,7 @@
   standard_name = air_temperature_updated_by_physics
   long_name = temperature updated by physics
   units = K
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = in
@@ -323,7 +323,7 @@
   standard_name = water_vapor_specific_humidity_updated_by_physics
   long_name = water vapor specific humidity updated by physics
   units = kg kg-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = in
@@ -332,7 +332,7 @@
   standard_name = instantaneous_atmosphere_updraft_convective_mass_flux
   long_name = (updraft mass flux) * delt
   units = kg m-2
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = in
@@ -341,7 +341,7 @@
   standard_name = instantaneous_atmosphere_downdraft_convective_mass_flux
   long_name = (downdraft mass flux) * delt
   units = kg m-2
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = in
@@ -350,7 +350,7 @@
   standard_name = instantaneous_atmosphere_detrainment_convective_mass_flux
   long_name = (detrainment mass flux) * delt
   units = kg m-2
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = in
@@ -392,7 +392,7 @@
   standard_name = lwe_thickness_of_convective_precipitation_amount_on_dynamics_timestep
   long_name = convective rain at this time step
   units = m
-  dimensions = (horizontal_dimension)
+  dimensions = (horizontal_loop_extent)
   type = real
   kind = kind_phys
   intent = inout
@@ -401,7 +401,7 @@
   standard_name = cumulative_cloud_work_function
   long_name = cumulative cloud work function (valid only with sas)
   units = m2 s-1
-  dimensions = (horizontal_dimension)
+  dimensions = (horizontal_loop_extent)
   type = real
   kind = kind_phys
   intent = inout
@@ -410,7 +410,7 @@
   standard_name = cumulative_change_in_temperature_due_to_deep_convection
   long_name = cumulative change in temperature due to deep conv.
   units = K
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
@@ -419,7 +419,7 @@
   standard_name = cumulative_change_in_water_vapor_specific_humidity_due_to_deep_convection
   long_name = cumulative change in water vapor specific humidity due to deep conv.
   units = kg kg-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
@@ -428,7 +428,7 @@
   standard_name = cumulative_change_in_x_wind_due_to_deep_convection
   long_name = cumulative change in x wind due to deep convection
   units = m s-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
@@ -437,34 +437,34 @@
   standard_name = cumulative_change_in_y_wind_due_to_deep_convection
   long_name = cumulative change in y wind due to deep convection
   units = m s-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
   optional = F
 [upd_mf]
   standard_name = cumulative_atmosphere_updraft_convective_mass_flux
   long_name = cumulative updraft mass flux
-  units = Pa
-  dimensions = (horizontal_dimension,vertical_dimension)
+  units = kg m-1 s-2
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
   optional = F
 [dwn_mf]
   standard_name = cumulative_atmosphere_downdraft_convective_mass_flux
   long_name = cumulative downdraft mass flux
-  units = Pa
-  dimensions = (horizontal_dimension,vertical_dimension)
+  units = kg m-1 s-2 
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
   optional = F
 [det_mf]
   standard_name = cumulative_atmosphere_detrainment_convective_mass_flux
   long_name = cumulative detrainment mass flux
-  units = Pa
-  dimensions = (horizontal_dimension,vertical_dimension)
+  units = kg m-1 s-2
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
@@ -473,7 +473,7 @@
   standard_name = convective_cloud_water_mixing_ratio
   long_name = moist convective cloud water mixing ratio
   units = kg kg-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
@@ -482,7 +482,7 @@
   standard_name = convective_cloud_cover
   long_name = convective cloud cover
   units = frac
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
@@ -491,7 +491,7 @@
   standard_name = convective_cloud_water_mixing_ratio_in_phy_f3d
   long_name = convective cloud water mixing ratio in the phy_f3d array
   units = kg kg-1
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout
@@ -500,7 +500,7 @@
   standard_name = convective_cloud_cover_in_phy_f3d
   long_name = convective cloud cover in the phy_f3d array
   units = frac
-  dimensions = (horizontal_dimension,vertical_dimension)
+  dimensions = (horizontal_loop_extent,vertical_dimension)
   type = real
   kind = kind_phys
   intent = inout