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lishen authored Sep 25, 2017
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Expand Up @@ -12,8 +12,8 @@ This is the companion site for our paper - "End-to-end Training for Whole Image

For our entry in the DREAM2016 Digital Mammography challenge, see this [write-up](https://www.synapse.org/LiShenDMChallenge). This work is much improved from our method used in the challenge.

## Model downloads
A few best models are available for downloading at this Google Drive [folder](https://drive.google.com/open?id=0B1PVLadG_dCKV2pZem5MTjc1cHc). Here is a table for individual downloads:
## Whole image model downloads
A few best whole image models are available for downloading at this Google Drive [folder](https://drive.google.com/open?id=0B1PVLadG_dCKV2pZem5MTjc1cHc). Here is a table for individual downloads:

| Database | Patch Classifier | Top Layers (two blocks) | Single AUC | Augmented AUC | Link |
|---|---|---|---|---|---|
Expand All @@ -28,6 +28,20 @@ A few best models are available for downloading at this Google Drive [folder](ht
- 3 Model averaging on DDSM gives AUC of 0.91
- 2 Model averaging on INbreast gives AUC of 0.96.

## Patch classifier model downloads
Several patch classifier models (i.e. patch state) are also available for downloading at this Google Drive [folder](https://drive.google.com/open?id=0B1PVLadG_dCKV2pZem5MTjc1cHc). Here is a table for individual download:

| Model | Train Set | Accuracy | Link |
|---|---|---|---|
| Resnet50 | S10 | 0.89 | [download](https://drive.google.com/open?id=0B1PVLadG_dCKMTc2RGV1NGF6bm8) |
| VGG16 | S10 | 0.84 | [download](https://drive.google.com/open?id=0B1PVLadG_dCKZUotelJBTzkwaGM) |
| VGG19 | S10 | 0.79 | [download](https://drive.google.com/open?id=0B1PVLadG_dCKUHFpeTgwaVFYS1E) |
| Resnet50 | S30 | 0.91 | [download](https://drive.google.com/open?id=0B1PVLadG_dCKSW1RZ0NzOVBJWHc) |
| VGG16 | S30 | 0.86 | [download](https://drive.google.com/open?id=0B1PVLadG_dCKbjdodnp2SlR2WFU) |
| VGG19 | S30 | 0.89 | [download](https://drive.google.com/open?id=0B1PVLadG_dCKNUpGc3Q1dWJ5OGM) |

With patch classifier models, you can convert them into any whole image classifier by adding convolutional, FC and heatmap layers on top and see for yourself.

## A bit explanation of this repository's file structure
- The **.py** files under the root directory are Python modules to be imported.
- You shall set the `PYTHONPATH` variable like this: `export PYTHONPATH=$PYTHONPATH:your_path_to_repos/end2end-all-conv` so that the Python modules can be imported.
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