nf-test for module sourmash/sketch (nf-core#4104)

* nf-test for module sourmash/sketch * add "sourmash" and "sourmash/sketch" tags Co-authored-by: Sateesh_Peri <33637490+sateeshperi@users.noreply.github.com> --------- Co-authored-by: Sateesh_Peri <33637490+sateeshperi@users.noreply.github.com>
laramiellindsey · Oct 18, 2023 · 1975ed7 · 1975ed7
1 parent 86edf75
commit 1975ed7
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Showing 4 changed files with 71 additions and 4 deletions.
diff --git a/modules/nf-core/sourmash/sketch/tests/main.nf.test b/modules/nf-core/sourmash/sketch/tests/main.nf.test
@@ -0,0 +1,36 @@
+nextflow_process {
+
+    name "Test Process SOURMASH_SKETCH"
+    script "../main.nf"
+    process "SOURMASH_SKETCH"
+    tag "sourmash"
+    tag "sourmash/sketch"
+    tag "modules"
+    tag "modules_nfcore"
+
+    test("Should run without failures") {
+
+        when {
+            params {
+                outdir = "$outputDir"
+            }
+            process {
+                """
+                input[0] =  [
+                                [ id:'test', single_end:false ], // meta map
+                                file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
+                            ]
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+
+    }
+
+}
diff --git a/modules/nf-core/sourmash/sketch/tests/main.nf.test.snap b/modules/nf-core/sourmash/sketch/tests/main.nf.test.snap
diff --git a/modules/nf-core/sourmash/sketch/tests/tags.yml b/modules/nf-core/sourmash/sketch/tests/tags.yml
@@ -0,0 +1,2 @@
+sourmash/sketch:
+  - modules/nf-core/sourmash/sketch/**
diff --git a/tests/config/pytest_modules.yml b/tests/config/pytest_modules.yml
@@ -3655,10 +3655,6 @@ sourmash/index:
   - modules/nf-core/sourmash/index/**
   - tests/modules/nf-core/sourmash/index/**
 
-sourmash/sketch:
-  - modules/nf-core/sourmash/sketch/**
-  - tests/modules/nf-core/sourmash/sketch/**
-
 sourmash/taxannotate:
   - modules/nf-core/sourmash/taxannotate/**
   - tests/modules/nf-core/sourmash/taxannotate/**
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		sourmash/sketch:
		- modules/nf-core/sourmash/sketch/**