add rechunking

I compared with rechunking at the copy stage, but that was much slower..
khanlab · Jan 14, 2025 · 1574a62 · 1574a62
1 parent 45bcf0c
commit 1574a62
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/workflow/scripts/imaris_to_ome_zarr.py b/workflow/scripts/imaris_to_ome_zarr.py
@@ -76,8 +76,7 @@
 for zarr_i,stain in enumerate(stains):
     #open zarr to get group name
     zi = zarr.open(in_zarr)
-    #darr_list.append(da.from_zarr(in_zarr,component=f'Channel {zarr_i}/Data').rechunk(rechunk_size))
-    darr_list.append(da.from_zarr(in_zarr,component=f'channel_{zarr_i}'))
+    darr_list.append(da.from_zarr(in_zarr,component=f'channel_{zarr_i}').rechunk(rechunk_size))
 
 
     #append to omero metadata