manifest fixes

Manifest.toml

@@ -1112,7 +1112,7 @@ version = "1.0.2"
 
 [[deps.NamedTrajectories]]
 deps = ["CairoMakie", "JLD2", "LaTeXStrings", "Latexify", "OrderedCollections", "Random", "Reexport", "Revise", "Unidecode"]
-path = "../NamedTrajectories.jl"
+git-tree-sha1 = "a109d8dee4055adb47bb435fd479dd67a50776af"
 uuid = "538bc3a1-5ab9-4fc3-b776-35ca1e893e08"
 version = "0.1.5"
 

docs/Manifest.toml

@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.10.1"
+julia_version = "1.10.3"
 manifest_format = "2.0"
 project_hash = "46fa82f4324d65b2cf462382aecded8067fca5f1"
 
@@ -84,18 +84,6 @@ version = "0.4.1"
 uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
 version = "1.1.1"
 
-[[deps.Arpack]]
-deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"]
-git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436"
-uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97"
-version = "0.5.4"
-
-[[deps.Arpack_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"]
-git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e"
-uuid = "68821587-b530-5797-8361-c406ea357684"
-version = "3.5.1+1"
-
 [[deps.ArrayInterface]]
 deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"]
 git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75"
@@ -293,7 +281,7 @@ weakdeps = ["Dates", "LinearAlgebra"]
 [[deps.CompilerSupportLibraries_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
-version = "1.1.0+0"
+version = "1.1.1+0"
 
 [[deps.CompositeTypes]]
 git-tree-sha1 = "02d2316b7ffceff992f3096ae48c7829a8aa0638"
@@ -676,24 +664,6 @@ git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2"
 uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe"
 version = "1.0.2"
 
-[[deps.HDF5]]
-deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"]
-git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53"
-uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
-version = "0.17.1"
-
-    [deps.HDF5.extensions]
-    MPIExt = "MPI"
-
-    [deps.HDF5.weakdeps]
-    MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
-
-[[deps.HDF5_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
-git-tree-sha1 = "e4591176488495bf44d7456bd73179d87d5e6eab"
-uuid = "0234f1f7-429e-5d53-9886-15a909be8d59"
-version = "1.14.3+1"
-
 [[deps.HTTP]]
 deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
 git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8"
@@ -1119,24 +1089,6 @@ git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0"
 uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
 version = "2024.0.0+0"
 
-[[deps.MPICH_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
-git-tree-sha1 = "656036b9ed6f942d35e536e249600bc31d0f9df8"
-uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4"
-version = "4.2.0+0"
-
-[[deps.MPIPreferences]]
-deps = ["Libdl", "Preferences"]
-git-tree-sha1 = "8f6af051b9e8ec597fa09d8885ed79fd582f33c9"
-uuid = "3da0fdf6-3ccc-4f1b-acd9-58baa6c99267"
-version = "0.1.10"
-
-[[deps.MPItrampoline_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
-git-tree-sha1 = "77c3bd69fdb024d75af38713e883d0f249ce19c2"
-uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748"
-version = "5.3.2+0"
-
 [[deps.MUMPS_seq_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "METIS_jll", "libblastrampoline_jll"]
 git-tree-sha1 = "840b83c65b27e308095c139a457373850b2f5977"
@@ -1199,12 +1151,6 @@ deps = ["Artifacts", "Libdl"]
 uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
 version = "2.28.2+1"
 
-[[deps.MicrosoftMPI_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "f12a29c4400ba812841c6ace3f4efbb6dbb3ba01"
-uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf"
-version = "10.1.4+2"
-
 [[deps.Missings]]
 deps = ["DataAPI"]
 git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272"
@@ -1322,12 +1268,6 @@ deps = ["Artifacts", "Libdl"]
 uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
 version = "0.8.1+2"
 
-[[deps.OpenMPI_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
-git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762"
-uuid = "fe0851c0-eecd-5654-98d4-656369965a5c"
-version = "4.1.6+0"
-
 [[deps.OpenSSL]]
 deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"]
 git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2"
@@ -1526,7 +1466,7 @@ uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
 version = "2.9.4"
 
 [[deps.QuantumCollocation]]
-deps = ["Arpack", "BenchmarkTools", "CairoMakie", "Colors", "Distributions", "Einsum", "ExponentialAction", "ForwardDiff", "HDF5", "IJulia", "Ipopt", "JLD2", "LaTeXStrings", "Libdl", "LinearAlgebra", "MathOptInterface", "NamedTrajectories", "OrderedCollections", "Random", "Reexport", "Revise", "SparseArrays", "Symbolics", "TrajectoryIndexingUtils"]
+deps = ["BenchmarkTools", "CairoMakie", "Distributions", "Einsum", "ExponentialAction", "ForwardDiff", "IJulia", "Ipopt", "JLD2", "Libdl", "LinearAlgebra", "MathOptInterface", "NamedTrajectories", "Random", "Reexport", "Revise", "SparseArrays", "Symbolics", "TestItemRunner", "TestItems", "TrajectoryIndexingUtils"]
 path = ".."
 uuid = "0dc23a59-5ffb-49af-b6bd-932a8ae77adf"
 version = "0.2.0"
@@ -1931,6 +1871,17 @@ version = "0.1.1"
 deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
 uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
+[[deps.TestItemRunner]]
+deps = ["Pkg", "TOML", "Test", "TestItems", "UUIDs"]
+git-tree-sha1 = "cb2b53fd36a8fe20c0b9f55da6244eb4818779f5"
+uuid = "f8b46487-2199-4994-9208-9a1283c18c0a"
+version = "0.2.3"
+
+[[deps.TestItems]]
+git-tree-sha1 = "8621ba2637b49748e2dc43ba3d84340be2938022"
+uuid = "1c621080-faea-4a02-84b6-bbd5e436b8fe"
+version = "0.1.1"
+
 [[deps.TiffImages]]
 deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "UUIDs"]
 git-tree-sha1 = "34cc045dd0aaa59b8bbe86c644679bc57f1d5bd0"
@@ -2107,12 +2058,6 @@ git-tree-sha1 = "51b5eeb3f98367157a7a12a1fb0aa5328946c03c"
 uuid = "9a68df92-36a6-505f-a73e-abb412b6bfb4"
 version = "0.2.3+0"
 
-[[deps.libaec_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "eddd19a8dea6b139ea97bdc8a0e2667d4b661720"
-uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0"
-version = "1.0.6+1"
-
 [[deps.libaom_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4"