use dbmen for eggnog #746
use dbmen for eggnog #746
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Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## develop #746 +/- ##
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Coverage 46.21% 46.21%
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Files 78 78
Lines 7028 7028
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Hits 3248 3248
Misses 3780 3780 ☔ View full report in Codecov by Sentry. |
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do you think this is causing the slow performance on the worker nodes? If so why wouldn't the login nodes be the same? |
Still testing the performance. I built the image in login node and test run it in an interactive node. The performance was even worse with this option. With this PR, I just want to build it and run via taskfarmer to see if it improves performance. The performance in general is worse in the worker nodes than in the login node. I used to cut the path to test directly with the login node. Moving forward, I probably will test things in an interactive node to get a better estimation. |
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But I went over issues on eggnog repo. This option is what the eggnog team suggested in one of the issues. |
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ok, sounds like you can test with the pr image so we don't need to merge this, but lmk if I'm wrong |
yea. I can test it with PR image. I will get back to you once I finished testing the image. |
closing PR. Surpassingly, a single genome takes more than 30 minutes to finish with this option for both 2 nodes and 5 nodes running mode. |
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