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RE2022-336: update tool containers to use threads_per_tool_run #711

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merged 8 commits into from
Apr 5, 2024

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Tianhao-Gu
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codecov bot commented Apr 5, 2024

Codecov Report

Attention: Patch coverage is 22.22222% with 7 lines in your changes are missing coverage. Please review.

Project coverage is 46.25%. Comparing base (a73abd9) to head (c4ecf35).

Files Patch % Lines
src/loaders/compute_tools/tool_common.py 0.00% 6 Missing ⚠️
...rc/loaders/genome_collection/parse_tool_results.py 0.00% 1 Missing ⚠️
Additional details and impacted files
@@             Coverage Diff             @@
##           develop     #711      +/-   ##
===========================================
- Coverage    46.25%   46.25%   -0.01%     
===========================================
  Files           78       78              
  Lines         7017     7018       +1     
===========================================
  Hits          3246     3246              
- Misses        3771     3772       +1     

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Comment on lines 26 to 28
- Remove the 'threads' and 'program_threads' parameters
- and introduce the capability to specify the number of threads per tool run
- pass job_id to the tool container and remove node_id
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I don't think you want the hyphen on 2nd line do you? I think that starts a new string

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👍

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Not sure if indentation needs to be added or not

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👍 sure.

src/loaders/compute_tools/tool_common.py Show resolved Hide resolved
@Tianhao-Gu Tianhao-Gu merged commit 2f2d45d into develop Apr 5, 2024
14 of 16 checks passed
@Tianhao-Gu Tianhao-Gu deleted the dev_taskfarmer_gen branch April 5, 2024 20:32
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2 participants