Merge branch 'develop' of github.com:kbase/collections into dev_fix_m…

…etadata_field

Pipfile

@@ -4,44 +4,41 @@ verify_ssl = true
 name = "pypi"
 
 [packages]
-fastapi = "==0.110.0"
-uvicorn = {version = "==0.29.0", extras = ["standard"]}
+fastapi = "==0.112.1"
+uvicorn = {version = "==0.30.6", extras = ["standard"]}
 jsonlines = "==4.0.0"
 cacheout = "==0.16.0"
-aiohttp = "==3.9.3"
-requests = "==2.31.0"
+aiohttp = "==3.10.3"
+requests = "==2.32.3"
 jinja-cli = "==1.2.2"
-pandas = "==2.2.1"
+pandas = "==2.2.2"
 ftputil = "==5.1.0"
 beautifulsoup4 = "==4.12.3"
-jsonschema = "==4.21.1"
+jsonschema = "==4.23.0"
 apscheduler = "==3.10.4"
-file-read-backwards = "==3.0.0"
+file-read-backwards = "==3.1.0"
 aiodns = "==3.2.0"
-docker = "==7.0.0"
+docker = "==7.1.0"
 click = "==8.1.7"
-PyYAML = "==6.0.1"
+PyYAML = "==6.0.2"
 python-dateutil = "==2.9.0.post0"
-numpy = "==1.26.4"
+numpy = "==2.0.1"
 jsonschema-default = "==1.6.0"
 mergedeep = "==1.3.4"
 httpx = "==0.27.0"
 requests-toolbelt = "==1.0.0"
 
 [dev-packages]
-# Installing 8.0.0 currently causes a conflict
-# I'm guessing one of the pytest-*s has a requirement of <8
-# but haven't checked
-pytest = "==7.4.4"
-coverage = "==7.4.4"
+pytest = "==8.3.2"
+coverage = "==7.6.1"
 pytest-cov = "==5.0.0"
-ipython = "==8.23.0"
-pytest-asyncio = "==0.23.6"
+ipython = "==8.26.0"
+pytest-asyncio = "==0.23.8"
 # currently for design/experiments/store_mongo.py
-pymongo = "==4.6.3"
-sourmash = "==4.8.7"
+pymongo = "==4.8.0"
+sourmash = "==4.8.11"
 prometheus-client = "==0.20.0"
-pyqt5 = "==5.15.10"
+pyqt5 = "==5.15.11"
 
 [requires]
 python_version = "3.11"