use dbmen for eggnog

kbase · Jul 11, 2024 · 7e5d658 · 7e5d658
1 parent 02f0fbe
commit 7e5d658
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diff --git a/src/loaders/compute_tools/eggnog/eggnog.py b/src/loaders/compute_tools/eggnog/eggnog.py
@@ -37,6 +37,7 @@ def _run_eggnog_single(
                '--excel',
                '--sensmode', 'fast',
                '--dmnd_iterate', 'no',
+               '--dbmem',  # optionally, requires ~44 GB of memory but can increase annotation speed
                '--override'  # Overwrites output files if they exist from previous runs.
                ]
 

diff --git a/src/loaders/compute_tools/eggnog/versions.yaml b/src/loaders/compute_tools/eggnog/versions.yaml
@@ -21,4 +21,10 @@ versions:
     date: 2024-06-25
     notes: |
       - Bug fix: tool_common.py - Converted Data IDs to string format to ensure proper comparison with associated folder names
+    reference_db_version: 5.0.2
+
+  - version: 0.1.4
+    date: 2024-07-10
+    notes: |
+      - use --dbmem option to increase annotation speed
     reference_db_version: 5.0.2