include ids_to_files

kbase · Aug 16, 2024 · 1e8a74d · 1e8a74d
1 parent b75a166
commit 1e8a74d
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Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/src/loaders/compute_tools/checkm2/checkm2.py b/src/loaders/compute_tools/checkm2/checkm2.py
@@ -72,7 +72,8 @@ def _run_checkm2(
     metadata = {'tool': 'checkm2',
                 'version': '1.0.1',
                 'command': command,
-                'reference_db': 'diamond_db ver unknown - saved copy in NERSC at global/cfs/cdirs/kbase/collections/libraries/checkm2/1.0.1/uniref100.KO.1.dmnd',}
+                'reference_db': 'diamond_db ver unknown - saved copy in NERSC at global/cfs/cdirs/kbase/collections/libraries/checkm2/1.0.1/uniref100.KO.1.dmnd',
+                'ids_to_files': ids_to_files}
     create_tool_metadata(output_dir, metadata)
 
 

diff --git a/src/loaders/compute_tools/gtdb_tk/gtdb_tk.py b/src/loaders/compute_tools/gtdb_tk/gtdb_tk.py
@@ -154,7 +154,8 @@ def _run_gtdb_tk(
     metadata = {'tool': 'gtdb_tk',
                 'version': '2.3.2',
                 'command': command,
-                'reference_db': 'release214',}
+                'reference_db': 'release214',
+                'ids_to_files': ids_to_files}
     create_tool_metadata(output_dir, metadata)