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Update docs/genome_to_collection.md
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Co-authored-by: MrCreosote <MrCreosote@users.noreply.github.com>
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Tianhao-Gu and MrCreosote authored Apr 9, 2024
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## [Step 2: Prepare Source Data Files (FASTA)](#step-2-prepare-source-data-files-fasta)

To run the collections pipeline you will need data uploaded as Genome objects in a KBase Narrative. You can use the Narrative interface to upload data. Additionally, for NCBI data, there are command line based options provided below.
To run the collections pipeline you will need data uploaded as Genome objects in a KBase Narrative.
You can use the Narrative interface to upload data. Additionally, for NCBI data, there are command
line based options provided below.

### If you already have a KBase narrative with target Genome objects
If you already possess a KBase narrative containing the desired Genome objects, download the FASTA files associated with
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