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45 Open 261 Closed
45 Open 261 Closed
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Issues list

Making AnnDataSet changes reflect in individual sample files
#376 opened Jan 31, 2025 by anthonyinsalaco1
2
install snapatac2 error -- Failed to build snapatac2 MACS3
#375 opened Jan 28, 2025 by hwa2Hu
Bug running harmony batch correction with multiple covariates
#370 opened Dec 13, 2024 by joseverdezoto
1
Unable to edit backed AnnData enhancement ✨ New feature or request
#369 opened Dec 11, 2024 by jpmcga
2
The value of 'Fraction of high-quality fragments overlapping peaks' is greater than 1
#362 opened Nov 18, 2024 by haloudashu
Cannot compute joint embedding on RNA and ATAC object
#350 opened Oct 9, 2024 by thecatsmilk
4
Is there a way generate a coverage plot for DARs? enhancement ✨ New feature or request
#337 opened Sep 6, 2024 by yojetsharma
snap.tl.macs3 error
#336 opened Sep 5, 2024 by HaikuoLi
5
macs3 function not works with multiple dataset
#332 opened Sep 2, 2024 by uqnsarke
4
AnnDataSet can not be converted to AnnData when the X is empty bug 🐛 Something isn't working
#331 opened Aug 30, 2024 by beyondpie
3
Label Transfer Using the SCVI-tools
#326 opened Aug 23, 2024 by aydinbol
1
Downstream analysis tutorial
#319 opened Aug 4, 2024 by GaF123
2
Extracting fragment count matrix
#316 opened Jul 18, 2024 by lf96abc
5
Vignette for downstream analysis tools?
#315 opened Jul 16, 2024 by zrlewis
3
Unexpected behavior in AnnDataSet subset
#310 opened Jun 24, 2024 by mtvector
snapatac2.tl.diff_test
#306 opened May 22, 2024 by TingTingShao
2
Accessing and plotting QC metrics after merging to AnnDataSet: more documentation needed documentation 📖 Improvements or additions to documentation
#300 opened Apr 26, 2024 by jeremymsimon
1
Error related to parallelism when running snap.tl.macs3 when running on the cluster documentation 📖 Improvements or additions to documentation
#298 opened Apr 22, 2024 by PauBadiaM
2
hard to understand about the description in filter features.
#290 opened Apr 8, 2024 by beyondpie
1
add_cor_scores
#286 opened Apr 2, 2024 by TingTingShao
4
obs_names resets to original barcodes when assigned via AnnDataset
#278 opened Mar 30, 2024 by newtonharry
trouble with pbmc notebook
#277 opened Mar 28, 2024 by vjcitn
4
SnapATAC2 Docker Image Pushed to Docker Hub
#263 opened Mar 16, 2024 by dtgz-sudo
add_cor_scores could only selects capitalized genes?
#260 opened Mar 15, 2024 by zkcao
1
Read bam with split reads enhancement ✨ New feature or request
#259 opened Mar 14, 2024 by lauradmartens
5
ProTip! Updated in the last three days: updated:>2025-01-31.