Skip to content

Version 2.0.0
Compare
Choose a tag to compare
@jtnystrom jtnystrom released this 20 Aug 09:02
· 239 commits to master since this release
v2.0.0
f947178

This version includes the following improvements.

  • Nearly 50% faster counting due to better algorithms, including a version of radix sort from the Fastutil library
  • Automatic selection of the most appropriate minimizer set from a directory, by matching with the desired (k, m) values
  • Support for interactive notebooks (a Zeppelin example is included) and a restructured API to support this
  • Hashed superkmers can now be queried by sequences to find matching k-mers
  • Support for lowercase nucleotide letters in input
  • Support for user-defined minimizer orderings (-o given)
  • Various simplifications and enhancements
Assets 3
Loading